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<h1 class="heading">Research library - LIPID MAPS Publications: 2007</h1>
<!--
<ul class="browse"><li><a href="/update/librarysubjects.html">subject list</a></li></ul>
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<h2>Key Lipidomics Publications</h2>
<strong>Special issues, with significant contributions from members of the LIPID MAPS Consortium</strong>
<ul class="research-lib-months update-details">
	<li><a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry, Metabolism, and Signaling Editorial</a>
		<p>Edited by H. Alex Brown and Lawrence J. Marnett.
		<span class="journalname">Chemical Reviews</span>, <strong>111</strong>, 5817-6512 (2011)
		</p>
	</li>
	<br>
	<li><a href="http://www.sciencedirect.com/science/journal/13881981/1811/11">Lipidomics and Imaging Mass Spectrometry</a>
		<p>Edited by Alfred H. Merrill and Robert C. Murphy.
		<span class="journalname">BBA - Molecular and Cellular Biology of Lipids</span>, <strong>1811</strong>, 635-1000 (2011)
		</p>
	</li>
	<br>

	<li><a href="http://www.sciencedirect.com/science/bookseries/00766879/432">Lipidomics and Bioactive Lipids: Mass-Spectrometry-Based Lipid Analysis</a>
	<p>Edited by H. Alex Brown.
	<span class="journalname">Methods in Enzymology</span>, <strong>432</strong>, 1-387 (2007)
	<br>- Download all <a href="/resources/downloads/2007_methods_chapters.pdf">LIPID MAPS Chapters</a> (PDF).
	</p>
	</li>
</ul>

<strong>Peer-reviewed journal articles</strong>
<ul class="research-lib-months update-details">
	<li>
		
		<a href='http://www.ncbi.nlm.nih.gov/pubmed/23455439'>A community-driven global reconstruction of human metabolism.</a>
		
		<p>
		<em>Nat Biotechnol.</em> 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3.
		</p>
	</li>
<br>
	<li><a href="http://www.annualreviews.org/doi/abs/10.1146/annurev-physiol-021909-135846">Macrophages, Inflammation, and Insulin Resistance</a>
 		<p>Jerrold M. Olefsky, Christopher K. Glass<!-- - Annual Reviews' 10th most downloaded article of 2011.-->
		<em>Annual Review of Physiology</em>, <strong>72</strong> 219-246 (2010)
		</p>
	</li>
</ul>

<p class="more">
<a href="/resources/lipidmapspublications/key.html">more key publications</a>
</p>

<!--
<p style="font-size:.8em;">
<a href="">Macrophages, Inflammation, and Insulin Resistance</a>, <em>Annual Review of Physiology</em>, Volume 72, Jerrold M. Olefsky, Christopher K. Glass - Annual Reviews' 10th most downloaded article of 2011.
<br>
<br><em>Chemical Reviews</em> Oct, 2011, Special issue: <a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry Metabolism and Signaling</a> Edited by H. Alex Brown and Lawrence J. Marnett
<br>
<br><em>BBA - Molecular and Cellular Biology of Lipids</em> Oct, 2011, Special issue: <a href="http://www.journals.elsevier.com/bba-molecular-and-cell-biology-of-lipids/">Lipidomics and Imaging Mass Spectrometry</a> Edited by Alfred H. Merrill and Robert C. Murphy
</p>
  <p class="more">
    <a href="/resources/lipidmapspublications/key.html">more key publications</a>
  </p>
-->



<!--
<strong>Special issues, with significant contributions from members of the LIPID MAPS Consortium</strong>
  <p>
    <em>Chemical Reviews</em> Oct, 2011, Special issue: <a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry Metabolism and Signaling</a> Edited by H. Alex Brown and Lawrence J. Marnett 
    <br><em>Methods in Enzymology, Academic Press</em> <strong>432</strong> (2007) - Download all <a href="/downloads/2007_methods_chapters.pdf">LIPID MAPS Chapters</a> (PDF).
  </p>

<strong>Special issues, with significant contributions from members of the LIPID MAPS Consortium</strong>
<ul class='list-item'>
  <li><em>BBA - Molecular and Cellular Biology of Lipids</em> Oct, 2011, Special issue: <a href="http://www.journals.elsevier.com/bba-molecular-and-cell-biology-of-lipids/">Lipidomics and Imaging Mass Spectrometry</a> Edited by Alfred H. Merrill and Robert C. Murphy</li>
  <li><em>Methods in Enzymology, Academic Press</em> <strong>432</strong> (2007) - Download all <a href="/downloads/2007_methods_chapters.pdf">LIPID MAPS Chapters</a> (PDF).</li>
</ul>
-->
<!--
<li>
<h3 class='title'>Macrophages, Inflammation, and Insulin Resistance</h3>
<p>Olefsky, J, Glass, C</p>
<p><span class="journalname">Annual Review of Physiology</span>, Volume 72 (2011)</p>
<p class="doi">[ PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/20148674">20148674</a> doi: <a href="http://dx.doi.org/10.1146/annurev-physiol-021909-135846">10.1146/annurev-physiol-021909-135846</a>]</p>
</li>
-->
<!--
<strong>Publications stemming from projects supported by LIPID MAPS funding</strong>
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<!--
<strong>Peer-reviewed journal articles</strong>
<ul class='list-item'>
  <li>year published:
     <a href="2012.html">2012</a>
   | <a href="2011.html">2011</a>
   | <a href="2010.html">2010</a>
   | <a href="2009.html">2009</a>
   | <a href="2008.html">2008</a>
   | <a href="2007.html">2007</a>
   | <a href="2006.html">2006</a>
   | <a href="2005.html">2005</a>
   | <a href="2004.html">2004</a>
   | <a href="2003.html">2003</a>
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<!--
<h2>The Lipid Web Literature Service: <a href='http://www.lipidhome.co.uk/lit-surv/lit-surv.html'>Lipids - Literature Surveys - Highlights</a></h2>

<p>These Literature Surveys are compiled by William (Bill) W. Christie and are focused on papers that utilize novel lipid methods.</p>
-->

<h2>LIPID MAPS Publications</h2>
  <p>Year published:
     <a href="/resources/lipidmapspublications/2003.html">2003</a>
   | <a href="/resources/lipidmapspublications/2004.html">2004</a>
   | <a href="/resources/lipidmapspublications/2005.html">2005</a>
   | <a href="/resources/lipidmapspublications/2006.html">2006</a>
   | <a href="/resources/lipidmapspublications/2007.html">2007</a>
   | <a href="/resources/lipidmapspublications/2008.html">2008</a>
   | <a href="/resources/lipidmapspublications/2009.html">2009</a>
   | <a href="/resources/lipidmapspublications/2010.html">2010</a>
   | <a href="/resources/lipidmapspublications/2011.html">2011</a>
   | <a href="/resources/lipidmapspublications/2012.html">2012</a>
   | <a href="/resources/lipidmapspublications/2013.html">2013</a>
   | <a href="/resources/lipidmapspublications/2014.html">2014</a>
   | <a href="/resources/lipidmapspublications/2015.html">2015</a>
   | <a href="/resources/lipidmapspublications/2016.html">2016</a>
   | <a href="/resources/lipidmapspublications/2017.html">2017</a>
</p>
<!--
   |  <a href="2012.html">2012</a>
  </li>
</ul>
<p>
  Year published:
     <a href="2003.html">2003</a>
   | <a href="2004.html">2004</a>
   | <a href="2005.html">2005</a>
   | <a href="2006.html">2006</a>
   | <a href="2007.html">2007</a>
   | <a href="2008.html">2008</a>
   | <a href="2009.html">2009</a>
   | <a href="2010.html">2010</a>
   | <a href="2011.html">2011</a>
   |  <a href="2012.html">2012</a>
</p>
<li>Key publications (2003 - 2012)
<em>Key publications -->
 <!-- (2003 - 2012)-->
<!--</em>
<ul class='list-item'>
  <li><a href="http://www.annualreviews.org/doi/abs/10.1146/annurev-physiol-021909-135846">Macrophages, Inflammation, and Insulin Resistance</a>, <em>Annual Review of Physiology</em>, Volume 72, Jerrold M. Olefsky, Christopher K. Glass - Annual Reviews' 10th most downloaded article of 2011.</li>
  <li><em>Chemical Reviews</em> Oct, 2011, Special issue: <a href="http://pubs.acs.org/toc/chreay/111/10">Lipid Biochemistry Metabolism and Signaling</a> Edited by H. Alex Brown and Lawrence J. Marnett </li>
  <li><em>BBA - Molecular and Cellular Biology of Lipids</em> Oct, 2011, Special issue: <a href="http://www.journals.elsevier.com/bba-molecular-and-cell-biology-of-lipids/">Lipidomics and Imaging Mass Spectrometry</a> Edited by Alfred H. Merrill and Robert C. Murphy</li>
</ul>
-->


<h2 class="sub-heading">2007</h2>
<ul class="research-lib-months update-details">
<li><h3 class="title">Biochemical analysis of phospholipase D.</h3>
<!-- <p>Brown, H. A., Henage, L. G., Preininger, A. M., Xiang, Y., and Exton, J. H.</p> -->
<p>Brown HA, Henage LG, Preininger AM, Xiang Y, and Exton JH</p>
<p><span class="journalname">Methods in Enzymology, Academic Press</span> <span class="journalvol">434</span>, 49-87 (2007)</p>
<p class="doi">
PMID: <a href="http://www.ncbi.nlm.nih.gov/pubmed/17954242">17954242</a>
[<a href="http://dx.doi.org/10.1016/S0076-6879(07)34004-4">10.1016/S0076-6879(07)34004-4</a>]
</p>
</li>

<li><h3 class="title">TLR-4 and sustained calcium agonists synergistically produce eicosanoids independent of protein synthesis in RAW264.7 cells.</h3>
<p>Buczynski M, Stephens D, Bowers-Gentry R, Grkovich A, Deems R and Dennis E.</p>
<p><span class="journalname">The Journal of Biological Chemistry</span> <span class="journalvol">282</span>, 22834-22847 (2007)</p>
<p class="doi">
PMID:<a href='http://www.ncbi.nlm.nih.gov/pubmed/17535806'>17535806</a>
[<a href="http://dx.doi.org/10.1074/jbc.M701831200">doi:10.1074/jbc.M701831200</a>]
</p>
</li>

<li><h3 class="title">A Laboratory information management system for high throughput experimental lipidomics: Minimal information required for the analysis of lipidomics experiments (MIALE).</h3>
<p>Byrnes R, Fahy E and Subramaniam S.</p>
<p><span class="journalname">Journal of the Association for Laboratory Automation</span> <span class="journalvol">12</span>, 230-238 (2007)</p>
<p class="doi">
<!-- <a href='http://www.jalajournal.com/article/S1535-5535(07)00106-2/abstract'>http://www.jalajournal.com/article/S1535-5535(07)00106-2/abstract</a></p></li> -->
[<a href="http://dx.doi.org/10.1016/j.jala.2007.04.002">doi:10.1016/j.jala.2007.04.002</a>]
</p>
</li>

<li><h3 class="title">Quantification of diacylglycerol species from cellular extracts by electrospray ionization mass spectrometry using a linear regression algorithm.</h3>
<p>Callender H, Forrester J, Ivanova P, Preininger A, Milne S and Brown H.</p> <!-- Hannah Callender et al. -->
<p><span class="journalname">Analytical Chemistry</span> <span class="journalvol">79</span>, 263-272 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17194150'>17194150</a>
[<a href="http://dx.doi.org/10.1021/ac061083q">doi:10.1021/ac061083q</a>]
</p>
</li>

<li><h3 class="title">Detection and quantitation of eicosanoids via high performance liquid chromatography-electrospray ionization-mass spectrometry.</h3>
<p>Deems R, Buczynski M, Bowers-Gentry R, Harkewicz R and Dennis E.</p> <!-- Raymond Deems et al. -->
<p><span class="journalname">Methods in Enzymology</span> <span class="journalvol">432</span>, 59-82 (2007)</p> <!-- Methods in Enzymology 432, 59-82 -->
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17954213'>17954213</a> [<a href="http://dx.doi.org/10.1016/S0076-6879(07)32003-X">doi:10.1016/S0076-6879(07)32003-X</a>]</p></li>

<li><h3 class="title">Bioinformatics of Lipids</h3>
<p>Fahy, E.</p>
<p>In <span class="journalname">Metabolomics, Metabonomics and Metabolite Profiling.</span>
Griffiths, W. ed., RSC Publishing, London, 195-209. Biomolecular Science series. (2007)</p>
<p class="doi">
[<a href="http://dx.doi.org/10.1039/9781847558107">10.1039/9781847558107</a>]
</p>

</li>

<li><h3 class="title">Bioinformatics for Lipidomics.</h3>
<p>Fahy E, Cotter D, Byrnes R, Sud M, Maer A, Li J, Nadeau D, Zhou Y, and Subramaniam S.</p>
<p><span class="journalname">Methods in Enzymology</span> <span class="journalvol">432</span>, 247-273 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17954221'>17954221</a>
[<a href="http://dx.doi.org/10.1016/S0076-6879(07)32011">10.1016/S0076-6879(07)32011</a>]
</p>
</li>

<li><h3 class="title">LIPID MAPS online tools for lipid research.</h3>
<p>Fahy E, Sud M, Cotter D and Subramaniam S.</p> <!-- Eoin Fahy et al. -->
<p><span class="journalname">Nucleic Acids Research</span> <span class="journalvol">35</span>, W606-12 (2007)</p>
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17584797'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17584797</a> -->
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17584797'>17584797</a> [<a href="http://dx.doi.org/10.1093/nar/gkm324">doi:10.1093/nar/gkm324</a>]</p></li>

<li><h3 class="title">Sphingomyelinase restricts the lateral diffusion of CD4 and inhibits human immunodeficiency virus fusion.</h3>
<p>Finnegan C, Rawat S, Cho E, Guiffre D, Lockett S, Merrill JA and Blumenthal R</p> <!-- Catherine Finnegan et al. -->
<p><span class="journalname">Journal of Virology</span> <span class="journalvol">81</span>, 5294-5304 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17344303'>17344303</a>
[<a href="http://dx.doi.org/10.1128/JVI.02553-06">doi:10.1128/JVI.02553-06</a>]</p></li>


<li><h3 class="title">Electrospray mass spectrometry of human hair wax esters</h3>
<p>Fitzgerald M, Murphy RC</p>
<p><span class="journalname">Journal of Lipid Research</span> <span class="journalvol">48</span>, 1231-46 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17277382'>17277382</a>
[<a href="http://dx.doi.org/10.1194/jlr.D700002-JLR200">10.1194/jlr.D700002-JLR200</a>]
</p>
</li>


<li><h3 class="title">Analysis of ubiquinones, dolichols and dolichol diphosphate-oligosaccharides by liquid chromatography-electrospray ionization mass spectrometry.</h3>
<!-- <p>Garrett, T. A., Guan, Z., and Raetz, C. R.</p> -->
<p>Garrett, TA, Guan, Z, and Raetz, CR.</p>
<p><span class="journalname">Methods in Enzymology, Academic Press</span> <span class="journalvol">432</span>, 117-142 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17954215'>17954215</a>
[<a href="http://dx.doi.org/10.1016/S0076-6879(07)32005-3">10.1016/S0076-6879(07)32005-3</a>]
</p>
</li>

<li><h3 class="title">Quantification of cardiolipin by liquid chromatography-electrospray ionization mass spectrometry.</h3>
<!-- <p>Garrett, T. A., Kordestani, R., and Raetz, C. R.</p> -->
<p>Garrett, TA, Kordestani, R, and Raetz, CR</p>
<p><span class="journalname">Methods in Enzymology, Academic Press</span> <span class="journalvol">433</span>, 213-230 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17954237'>17954237</a>
[<a href="http://dx.doi.org/10.1016/S0076-6879(07)33012-7">10.1016/S0076-6879(07)33012-7</a>]
</p>
</li>

<li><h3 class="title">Parallel SUMOylation-dependent pathways mediate gene- and signal-specific transrepression by LXRs and PPARgamma.</h3>
<p>Ghisletti S, Huang W, Ogawa S, Pascual G, Lin M, Willson T, Rosenfeld M and Glass C.</p> <!-- Serena Ghisletti et al. -->
<p><span class="journalname">Molecular Cell</span> <span class="journalvol">25</span>, 57-70 (2007)</p> <!-- Molecular Cell 25, 57-70 (Jan 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17218271'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17218271</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17218271'>17218271</a> [<a href="http://dx.doi.org/10.1016/j.molcel.2006.11.022">doi:10.1016/j.molcel.2006.11.022</a>]</p></li>

<li><h3 class="title">Identification of N-acylphosphatidylserine molecules in eukaryotic cells.</h3>
<p>Guan Z, Li S, Smith D, Shaw W and Raetz C.</p> <!-- Ziqiang Guan et al. -->
<p><span class="journalname">Biochemistry</span> <span class="journalvol">46</span>, 14500-14513 (2007)</p> <!-- Biochemistry 46, 14500-13 (Dec 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=18031065'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=18031065</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/18031065'>18031065</a> [<a href="http://dx.doi.org/10.1021/bi701907g">doi:10.1021/bi701907g</a>]</p></li>

<li><h3 class="title">Sublimation as a method of matrix application for mass spectrometric imaging.</h3>
<p>Hankin J, Barkley R and Murphy R.</p> <!-- Joseph Hankin, Robert Barkley, and Robert Murphy -->
<p><span class="journalname">Journal of the American Society for Mass Spectrometry</span> <span class="journalvol">18</span>, 1646-1652 (2007)</p> <!-- Journal of the American Society for Mass Spectrometry 18, 1646-52 (Sep 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17659880'>http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17659880</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17659880'>17659880</a> [<a href="http://dx.doi.org/10.1016/j.jasms.2007.06.010">doi:10.1016/j.jasms.2007.06.010</a>]</p></li>

<li><h3 class="title">Arachidonate-derived dihomoprostaglandin production observed in endotoxin-stimulated macrophage-like cells.</h3>
<p>Harkewicz R, Fahy E, Andreyev A and Dennis E.</p> <!-- Richard Harkewicz et al. -->
<p><span class="journalname">The Journal of Biological Chemistry</span> <span class="journalvol">282</span>, 2899-2910 (2007)</p> <!-- The Journal of Biological Chemistry 282, 2899-2910 (Feb 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17135246'>http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17135246</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17135246'>17135246</a> [<a href="http://dx.doi.org/10.1074/jbc.M610067200">doi:10.1074/jbc.M610067200</a>]</p></li>

<li><h3 class="title">Macrophage PPAR gamma is required for normal skeletal muscle and hepatic insulin sensitivity and full antidiabetic effects of thiazolidinediones.</h3>
<p>Hevener A, Olefsky J, Reichart D, Nguyen M, Bandyopadyhay G, Leung H, Watt M, Benner C, Febbraio M, Nguyen A, Folian B, Subramaniam S, Gonzalez F, Glass C and Ricote M.</p> <!-- Andrea Hevener et al. -->
<p><span class="journalname">The Journal of Clinical Investigation</span> <span class="journalvol">117</span>, 1658-1669 (2007)</p> <!-- The Journal of Clinical Investigation 117, 1658-69 (Jun 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17525798'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17525798</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17525798'>17525798</a> [<a href="http://dx.doi.org/10.1172/JCI31561">doi:10.1172/JCI31561</a>]</p></li>

<li>
<h3 class="title">Glycerophospholipid identification and quantitation by electrospray mass spectrometry</h3>
<p>Ivanova PT, Milne SB, Byrne MO, Xiang Y, Brown HA</p>
<p><span class="journalname">Methods in Enzymology, Academic Press</span> <span class="journalvol">432</span>, 21-57 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17954212'>17954212</a>
[<a href="http://dx.doi.org/10.1016/S0076-6879(07)32002-8">10.1016/S0076-6879(07)32002-8</a>]
</p>
</li>

<li><h3 class="title">N-(3-Hydroxyhexanoyl)-L-Homoserine Lactone Is the Biologically Relevant Quormone That Regulates the phz Operon of Pseudomonas chlororaphis Strain 30-84</h3>
<p>Khan SR, Herman J, Krank J, Serkova NJ, Churchill MEA, Suga H and Farrand SK.</p>
<p><span class="journalname">Applied Environmental Microbiology</span> <span class="journalvol">73</span>, 7443-55 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17921283'>17921283</a>]
[<a href="http://dx.doi.org/10.1128/AEM.01354-07">10.1128/AEM.01354-07</a>]
</p>
</li>

<li><h3 class="title">Qualitative analysis and quantitative assessment of changes in neutral glycerol lipid molecular species within cells.</h3>
<!-- <p>Krank, J., Murphy, R. C., Barkley, R. M., Duchoslav, E., and McAnoy, A.</p> -->
<p>Krank J, Murphy RC, Barkley RM, Duchoslav E, and McAnoy A.</p>
<p><span class="journalname">Methods in Enzymology, Academic Press</span> <span class="journalvol">432</span>, 1-20 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17954211'>17954211</a>
[<a href="http://dx.doi.org/10.1016/S0076-6879(07)32001-6">10.1016/S0076-6879(07)32001-6</a>]
</p>
</li>

<li><h3 class="title">Ceramide kinase uses ceramide provided by ceramide transport protein: localization to organelles of eicosanoid synthesis.</h3>
<p>Lamour N, Stahelin R, Wijesinghe D, Maceyka M, Wang E, Allegood J, Merrill JA, Cho W and Chalfant C.</p> <!-- Nadia Lamour et al. -->
<p><span class="journalname">Journal of Lipid Research</span> <span class="journalvol">48</span>, 1293-1304 (2007)</p> <!-- Journal of Lipid Research 48, 1293-1304 (Jun 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/pubmed/17392267'>http://www.ncbi.nlm.nih.gov/pubmed/17392267</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17392267'>17392267</a> [<a href="http://dx.doi.org/10.1194/jlr.M700083-JLR200">doi:10.1194/jlr.M700083-JLR200</a>]</p></li>

<li><h3 class="title">Systems Biology of Macrophages.</h3>
<p>Maurya MR, Benner C, Pradervand S, Glass C, and Subramaniam S</p>
<p>In <span class="journalname">Current Topics in Innate Immunity</span>, Ed. J.D. Lambris. 62-79. Springer, New York (2007)</p></li>
<br>

<li><h3 class="title">A kinetic model for calcium dynamics in RAW 264.7 cells: 1. mechanisms, parameters, and subpopulational variability.</h3>
<p>Maurya MR and Subramaniam S.</p> <!-- Mano Maurya and Shankar Subramaniam -->
<p><span class="journalname">Biophysical Journal</span> <span class="journalvol">93</span>, 709-728 (2007)</p> <!-- Biophysical Journal 93, 709-28 (Aug 2007) -->
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17483174'>17483174</a> [<a href="http://dx.doi.org/10.1529/biophysj.106.097469">doi:10.1529/biophysj.106.097469</a>]</p></li>

<li><h3 class="title">A kinetic model for calcium dynamics in RAW 264.7 cells: 2. knockdown response and long-term response.</h3>
<p>Maurya MR, Subramaniam S</p>
<p><span class="journalname">Biophysical Journal</span> <span class="journalvol">J 93</span>, 729-40 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17483189'>17483189</a>
[<a href="http://dx.doi.org/10.1529/biophysj.106.097501">10.1529/biophysj.106.097501</a/>]
</p>
</li>

<li><h3 class="title">Extraction and analysis of sterols in biological matrices by high-performance liquid chromatography electrospray ionization mass spectrometry.</h3>
<!-- <p>McDonald, J. G., Thompson, B., McCrum, E. C., and Russell, D. W.</p> -->
<p>McDonald JG, Thompson B, McCrum EC, and Russell DW.</p>
<p><span class="journalname">Methods in Enzymology, Academic Press</span> <span class="journalvol">432</span>, 143-168 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17954216'>17954216</a>
[<a href="http://dx.doi.org/10.1016/S0076-6879(07)32006-5">10.1016/S0076-6879(07)32006-5</a>]
</p>
</li>

<li><h3 class="title">(Glyco)sphingolipidology: an amazing challenge and opportunity for systems biology.</h3>
<p>Merrill JA, Wang M, Park M and Sullards M.</p> <!-- Alfred Merrill Jr et al. -->
<p><span class="journalname">Trends in Biochemical Sciences</span> <span class="journalvol">32</span>, 457-468 (2007)</p> <!-- Trends in Biochemical Sciences 32, 457-68 (Oct 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17928229'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17928229</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17928229'>17928229</a> [<a href="http://dx.doi.org/10.1016/j.tibs.2007.09.004">doi:10.1016/j.tibs.2007.09.004</a>]</p></li>

<li><h3 class="title">Quantitation and standardization of lipid internal standards for mass spectroscopy.</h3>
<!-- <p>Moore, J. D., Caufield, W. V., and Shaw, W.</p> -->
<p>Moore JD, Caufield WV, and Shaw W</p>
<p><span class="journalname">Methods in Enzymology, Academic Press</span> <span class="journalvol">432</span>, 351-367 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17954224'>17954224</a>
[<a href="http://dx.doi.org/10.1016/S0076-6879(07)32014-4">10.1016/S0076-6879(07)32014-4</a>]
</p>
</li>

<li><h3 class="title">Cytoplasmic remodeling of erythrocyte raft lipids during infection by the human malaria parasite Plasmodium falciparum.</h3>
<p>Murphy S, Fernandez-Pol S, Chung P, Murthy S, Milne S, Salomao M, Brown H, Lomasney J, Mohandas N and Haldar K.</p> <!-- Sean Murphy et al. -->
<p><span class="journalname">Blood</span> <span class="journalvol">110</span>, 2132-2139 (2007)</p>
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17526861'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17526861</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17526861'>17526861</a> [<a href="http://dx.doi.org/10.1182/blood-2007-04-083873">doi:10.1182/blood-2007-04-083873</a>]</p></li>

<li><h3 class="title">Neutral lipidomics and mass spectrometry</h3>
<p>Murphy, R. C., Fitzgerald, M., and Barkley, R. M.</p></li>
<p>in <span class="journalname">Metabolomics, Metabonomics and Metabolite Profiling.</span>
<!-- <p>Griffiths, W. ed.,<span class="journalname">RSC Publishing, London, 161-189.</span>(Biomolecular Science series)</p> -->
Griffiths, W. ed., RSC Publishing, London, 195-209. Biomolecular Science series. (2007)</p>
<p class="doi">
</p>
</li>

<li><h3 class="title">Detection of the abundance of diacylglycerol and triacylglycerol molecular species in cells using neutral loss mass spectrometry.</h3>
<p>Murphy R, James P, McAnoy A, Krank J, Duchoslav E and Barkley R</p>
<p><span class="journalname">Analytical Biochemistry</span> <span class="journalvol">366</span>, 59-70 (2007)</p> <!-- Analytical Biochemistry 366, 59-70 (Jul 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17442253'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17442253</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17442253'>17442253</a> [<a href="http://dx.doi.org/10.1016/j.ab.2007.03.012">doi:10.1016/j.ab.2007.03.012</a>]</p></li>

<li>
<h3 class="title">Hypoxia stimulates degradation of 3-hydroxy-3-methylglutaryl-coenzyme A reductase through accumulation of lanosterol and hypoxia-inducible factor-mediated induction of insigs</h3>
<p>Nguyen AD, McDonald JG, Bruick RK, DeBose-Boyd RA</p>
<p><span class="journalname">Journal of Biological Chemistry</span> <span class="journalvol">282</span>, 27436-46 (2007)
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17635920'>17635920</a>
[<a href="http://dx.doi.org/10.1074/jbc.M704976200">10.1074/jbc.M704976200</a>
</li>

<li><h3 class="title">Ceramide transfer protein function is essential for normal oxidative stress response and lifespan.</h3>
<p>Rao R, Yuan C, Allegood J, Rawat S, Edwards M, Wang X, Merrill JA, Acharya U and Acharya J.</p> <!-- Raghavendra Rao et al. -->
<p><span class="journalname">Proceedings of the National Academy of Sciences</span> <span class="journalvol">104</span>, 11364-11369 (2007)</p> <!-- Proceedings of the National Academy of Sciences 104, 11364-9 (Jul 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17592126'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17592126</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17592126'>17592126</a> [<a href="http://dx.doi.org/10.1073/pnas.0705049104">doi:10.1073/pnas.0705049104</a>]</p></li>

<li><h3 class="title">Lipid profiling reveals glycerophospholipid remodeling in zymosan-stimulated macrophages.</h3>
<p>Rouzer C, Ivanova P, Byrne M, Brown H and Marnett L.</p> <!-- Carol Rouzer et al. -->
<p><span class="journalname">Biochemistry</span> <span class="journalvol">46</span>, 6026-6042 (2007)</p> <!-- Biochemistry 46 (20), 6026-42 (22 May 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17458939'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17458939</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17458939'>17458939</a> [<a href="http://dx.doi.org/10.1021/bi0621617">doi:10.1021/bi0621617</a>]</p></li>

<li><h3 class="title">The lipid maps initiative in lipidomics.</h3>
<p>Schmelzer K, Fahy E, Subramaniam S, and Dennis EA</p>
<p><span class="journalname">Methods in Enzymology, Academic Press</span> <span class="journalvol">432</span>, 169-181 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17954217'>17954217</a>
[<a href="http://dx.doi.org/10.1016/S0076-6879(07)32007-7">10.1016/S0076-6879(07)32007-7</a>]
</p>
</li>

<li>
<h3 class="title">The lipid lysyl-phosphatidylglycerol is present in membranes of Rhizobium tropici CIAT899 and confers increased resistance to polymyxin B under acidic growth conditions</h3>
<p>Sohlenkamp C, Galindo-Lagunas KA, Guan Z, Vinuesa P, Robinson S, Thomas-Oates J, Raetz CR, Geiger O</p>
<p class="journalname">Mol Plant Microbe Interact</span> <span class="journalvol">20</span> 1421-30 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/17977153'>17977153</a>
[<a href="http://dx.doi.org/10.1094/MPMI-20-11-1421">10.1094/MPMI-20-11-1421</a>]
</p></li>

<li><h3 class="title">Loss of cardiac tetralinoleoyl cardiolipin in human and experimental heart failure.</h3>
<p>Sparagna G, Chicco A, Murphy R, Bristow M, Johnson C, Rees M, Maxey M, McCune S and Moore R.</p> <!-- Genevieve Sparagna et al. -->
<p><span class="journalname">Journal of Lipid Research</span> <span class="journalvol">48</span>, 1559-1570 (2007)</p> <!-- Journal of Lipid Research 48, 1559-70 (Jul 2007) -->
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17426348'>17426348</a>
[<a href="http://dx.doi.org/10.1194/jlr.M600551-JLR200">doi:10.1194/jlr.M600551-JLR200</a>]
</p>
</li>

<li>
<h3 class="title">LMSD: LIPID MAPS structure database</h3>
<p>Sud M, Fahy E, Cotter D, Brown A, Dennis EA, Glass CK, Merrill AH, Jr., Murphy RC, Raetz CR, Russell DW, Subramaniam S</p>
<p><span class="journalname">Nucleic Acids Research</span> <span class="journalvol">35</span>, D527-32 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17098933'>17098933</a>
[<a href="http://dx.doi.org/10.1093/nar/gkl838">10.1093/nar/gkl838</a>]
</p>
</li>

<li><h3 class="title">Structure-specific, quantitative methods for analysis of sphingolipids by liquid-chromatography tandem mass spectrometry: "Inside-out" sphingolipidomics.</h3>
<!-- <p>Sullards, M. C., Allegood, J. C., Kelly, S., Wang, E., Haynes, C. A., Park, H., Chen, Y., Shaner, R., and Merrill, A. H., Jr.</p> -->
<p>Sullards MC, Allegood JC, Kelly S, Wang E, Haynes CA, Park H, Chen Y, Shaner R, and Merrill AH Jr.</p>
<p><span class="journalname">Methods in Enzymology, Academic Press</span> <span class="journalvol">432</span>, 83-115 (2007)</p>
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17954214'>17954214</a>
[<a href="http://dx.doi.org/10.1016/S0076-6879(07)32004-1">10.1016/S0076-6879(07)32004-1</a>]
</p>
</li>

<li><h3 class="title">FcepsilonRI and Thy-1 domains have unique protein and lipid compositions.</h3>
<p>Surviladze Z, Harrison K, Murphy R and Wilson B.</p> <!-- Zurab Surviladze et al. -->
<p><span class="journalname">Journal of Lipid Research</span> <span class="journalvol">48</span>, 1325-1335 (2007)</p> <!-- Journal of Lipid Research 48, 1325-35 (Jun 2007) -->
<p class="doi">
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17387221'>17387221</a>
[<a href="http://dx.doi.org/10.1194/jlr.M600485-JLR200">doi:10.1194/jlr.M600485-JLR200</a>]</p></li>

<li><h3 class="title">Elucidation of double bond position in unsaturated lipids by ozone electrospray ionization mass spectrometry.</h3>
<p>Thomas M, Mitchell T, Harman D, Deeley J, Murphy R and Blanksby S.</p> <!-- Michael Thomas et al. -->
<p><span class="journalname">Analytical Chemistry</span> <span class="journalvol">79</span>, 5013-5022 (2007)</p> <!-- Analytical Chemistry 79, 5013-22 (Jul 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17547368'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17547368</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17547368'>17547368</a> [<a href="http://dx.doi.org/10.1021/ac0702185">doi:10.1021/ac0702185</a>]</p></li>

<li><h3 class="title">Steroidogenic factor-1 is a sphingolipid binding protein.</h3>
<p>Urs A, Dammer E, Kelly S, Wang E, Merrill JA and Sewer M.</p> <!-- Aarti Urs et al. -->
<p><span class="journalname">Molecular and Cellular Endocrinology</span> <span class="journalvol">265</span>, 174-178 (2007)</p> <!-- Molecular and Cellular Endocrinology 265, 174-8 (Feb 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17196738'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17196738</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17196738'>17196738</a> [<a href="http://dx.doi.org/10.1016/j.mce.2006.12.016">doi:10.1016/j.mce.2006.12.016</a>]</p></li>

<li><h3 class="title">Attenuated virulence of a Francisella mutant lacking the lipid A 4'-phosphatase.</h3>
<p>Wang X, Ribeiro A, Guan Z, Abraham S and Raetz C.</p> <!-- Xiaoyuan Wang et al. -->
<p><span class="journalname">Proceedings of the National Academy of Sciences</span> <span class="journalvol">104</span>, 4136-4141 (2007)</p> <!-- Proceedings of the National Academy of Sciences 104, 4136-41 (Mar 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17360489'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17360489</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17360489'>17360489</a> [<a href="http://dx.doi.org/10.1073/pnas.0611606104">doi:10.1073/pnas.0611606104</a>]</p></li>

<li><h3 class="title">Identification and quantification of dolichol and dolichoic acid in neuromelanin from substantia nigra of the human brain.</h3>
<p>Ward W, Guan Z, Zucca F, Fariello R, Kordestani R, Zecca L, Raetz C and Simon J.</p> <!-- Weslyn Ward et al. -->
<p><span class="journalname">Journal of Lipid Research</span> <span class="journalvol">48</span>, 1457-1462 (2007)</p> <!-- Journal of Lipid Research 48, 1457-62 (Jul 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17446624'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17446624</a> --> 
PMID: <a href='http://www.ncbi.nlm.nih.gov/pubmed/17446624'>17446624</a> [<a href="http://dx.doi.org/10.1194/jlr.C700008-JLR200">doi:10.1194/jlr.C700008-JLR200</a>]</p></li>

<li><h3 class="title">An undecaprenyl phosphate-aminoarabinose flippase required for polymyxin resistance in Escherichia coli.</h3>
<p>Yan A, Guan Z and Raetz C.</p> <!-- Aixin Yan, Ziqiang Guan, and Christian Raetz -->
<p><span class="journalname">The Journal of Biological Chemistry</span> <span class="journalvol">282</span>, 36077-36089 (2007)</p> <!-- The Journal of Biological Chemistry 282, 36077-89 (Dec 2007) -->
<p class="doi"> <!-- <br><a href='http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17928292'>http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;dopt=Citation&amp;list_uids=17928292</a> --> [<a href="http://dx.doi.org/10.1074/jbc.M706172200">doi:10.1074/jbc.M706172200</a>]</p></li>


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