Pathways

We have carefully constructed these lipid pathways based on LIPID MAPS experimental data and data from the literature. LIPID MAPS experimental data obtained from our lipid time course experiments and microarray experiments on macrophagese were mapped to corresponding lipids and genes, respectively.


Eicosanoids media Pathway maps created using VANTED

VANTED is a tool for the visualization and analysis of networks with related experimental data. For more information on VANTED, please refer to: Björn H. Junker, Christian Klukas and Falk Schreiber (2006): VANTED: A system for advanced data analysis and visualization in the context of biological networks. BMC Bioinformatics, 7:109 (http://www.biomedcentral.com/1471-2105/7/109)


Arachidonic Acid Metabolism Pathway maps and pathway files for editing within Pathway Editor

Pathway Editor is a program for managing, visualizing, and editing signaling and metabolic pathways. Pathways may be created from scratch, visualized by opening a .path file, or may be downloaded from the LIPID MAPS website. Measured data may be downloaded by the program and displayed graphically.


Arachidonic Acid Metabolism
  • BioPAX Level 3 files (biopax3.zip)


    25 LIPID MAPS Pathways, created using the Pathway Editor acting on downloaded path files from our Pathway database


  • Pathway table Tabular display of lipid pathways (including structures and gene information)

    Lipid-related pathways, or portions of pathways are displayed in tabular format with lipid structures and related information organized in columns. Another display format is an enzymatic reaction format where substrate and product are displayed in separate rows, with an intervening row showing the gene information for the enzyme catalyzing that step.

    logo LIPID MAPS is funded by a grant from the National Institute of General Medical Sciences of the National Institutes of Health.