Section 2 (lipidomics data repositories)

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capture_2 MetaboLights Metabolomics Workbench
Analyses types MS (LC-MS, GC-MS, DI-MS, MS-Imaging, FIA-MS, CE-MS, GCxGC-MS), NMR, LC-DAD, GC-FID MS, NMR
Number of datasets 2,389 1,715
Dataset curation Https://www.ebi.ac.uk/metabolights/editor/console Https://www.metabolomicsworkbench.org/data/DRCCDataDeposit.php
Experimental metadata Yes (Required for study submission and available to download): Metadata is structured using the Investigation, Study, and Assay (ISA)-Tab file format and linked to community-developed controlled vocabularies and ontologies whenever possible Required for upload and available for download
Raw data Yes (Required for study submission and available to download). Raw file formats: baf, cmp, d, dat, fid, hr, ibd, jpf, lcd, ms, peg, qgd, raw, ser, wiff + wiff.scan, smp Highly recommended for upload and available for download
Processed data Yes (List of identified lipids/metabolites; relative and absolute quantities; available for download). Derived file formats: cdf, cef^, cnx^, dx^, imzml, mgf^, msp^, mzml, mzxml, nmrml, peakml^, xlsx^, xy^ (^ not acceptable alone - must be accompanied with spectrum / chromatogram data). List of identified lipids/metabolites; relative and absolute quantities; required for upload and available for download