Structure Database (LMSD)

Systematic Name
Manα1-2Galα1-6GlcNα1-4GlcAα-Cer(d21:1(13cy3)/14:0(2OH[S]))
Synonyms
LM ID
LMSP06000006
Formula
Exact Mass
Calculate m/z
1228.729209
Status
Curated

Classification

References

Comments
Submitted by B Spenceley & D Campopiano

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Sphingomonas paucimobilis (#13689)
Alphaproteobacteria (#28211)
Chemical structure of glycosphingolipids isolated from Sphingomonas paucimobilis.,
FEBS Lett, 1991
Pubmed ID: 1959589

String Representations

InChiKey (Click to copy)
DGQHPSAPPOUWQY-LRURYMCRSA-N
InChi (Click to copy)
InChI=1S/C59H108N2O24/c1-3-5-7-9-10-11-12-15-19-23-27-37(65)54(75)61-35(36(64)26-22-18-16-13-14-17-21-25-34-28-33(34)24-20-8-6-4-2)31-78-57-50(74)48(72)51(53(85-57)55(76)77)83-56-41(60)45(69)44(68)40(82-56)32-79-59-52(47(71)43(67)39(30-63)81-59)84-58-49(73)46(70)42(66)38(29-62)80-58/h33-53,56-59,62-74H,3-32,60H2,1-2H3,(H,61,75)(H,76,77)/t33?,34?,35-,36+,37-,38+,39+,40+,41+,42+,43-,44+,45+,46-,47-,48+,49-,50+,51-,52+,53-,56+,57-,58+,59-/m0/s1
SMILES (Click to copy)
[C@](CO[C@@H]1[C@H](O)[C@@H](O)[C@H](O[C@@H]2[C@H](N)[C@@H](O)[C@H](O)[C@@H](CO[C@@H]3[C@H](O[C@@H]4[C@@H](O)[C@@H](O)[C@H](O)[C@@H](CO)O4)[C@@H](O)[C@@H](O)[C@@H](CO)O3)O2)[C@@H](C(=O)O)O1)([H])(NC([C@@H](O)CCCCCCCCCCCC)=O)[C@]([H])(O)CCCCCCCCCC1CC1CCCCCC

Other Databases

PubChem CID

Calculated Physicochemical Properties

Heavy Atoms 85
Rings 5
Aromatic Rings
Rotatable Bonds 42
Van der Waals Molecular Volume 1195.14
Topological Polar Surface Area 437.53
Hydrogen Bond Donors 16
Hydrogen Bond Acceptors 26
logP 7.70
Molar Refractivity 316.19

Admin

Created at
20th Mar 2026
Updated at
20th Mar 2026