Structure Database (LMSD)

Common Name
GlcCer(t18:1(8Z)/25:0(2OH[R]))
Systematic Name
N-(2R-hydroxypentacosanoyl)-1-β-glucosyl-4R-hydroxy-8Z-octadecasphingenine
Synonyms
  • 1-O-glucopyranosyl-2-N-2'-hydroxypentacosanoyl-4-hydroxy-8-sphingenine
LM ID
LMSP05010046
Formula
Exact Mass
Calculate m/z
857.6956
Sum Composition
Abbrev Chains
GlcCer 18:1;O3/25:1;O
Status
Curated

Classification

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Euphorbia (#3990)
Magnoliopsida (#3398)
Sphingolipids with neuritogenic activity from Euphorbia sororia.,
Chem Phys Lipids, 2007
Pubmed ID: 17540352

String Representations

InChiKey (Click to copy)
JPDBHJZMCPAOTJ-XEZHIDIRSA-N
InChi (Click to copy)
InChI=1S/C49H95NO10/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-25-27-29-31-33-35-37-42(53)48(58)50-40(39-59-49-47(57)46(56)45(55)43(38-51)60-49)44(54)41(52)36-34-32-30-28-26-16-14-12-10-8-6-4-2/h28,30,40-47,49,51-57H,3-27,29,31-39H2,1-2H3,(H,50,58)/b30-28-/t40-,41+,42+,43+,44-,45+,46-,47+,49+/m0/s1
SMILES (Click to copy)
[C@](CO[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](CO)O1)([H])(NC([C@H](O)CCCCCCCCCCCCCCCCCCCCCCC)=O)[C@]([H])(O)[C@H](O)CCC/C=C\CCCCCCCCC

Other Databases

PubChem CID

Calculated Physicochemical Properties

Heavy Atoms 60
Rings 1
Aromatic Rings 0
Rotatable Bonds 42
Van der Waals Molecular Volume 937.52
Topological Polar Surface Area 191.24
Hydrogen Bond Donors 8
Hydrogen Bond Acceptors 11
logP 11.99
Molar Refractivity 248.11

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Created at
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Updated at
6th May 2025