Structure Database (LMSD)

Common Name
Epothilone A
Systematic Name
Synonyms
LM ID
LMPK04000040
Formula
Exact Mass
Calculate m/z
493.24981
Status
Curated

Classification

Biological Context

Epothilone A (Epo A) is a biologically active macrolide produced from the fermentation of the soil bacteria S. cellulosum that was discovered as a potent antimicrotubule agent.1,2,3 In competition assays, epo A binds to β-tubulin with a similar order of magnitude as the binding of paclitaxel to β-tubulin (IC50s = 2.3 and 3.6 µM, respectively).1,2,3,4 Epo A is cytotoxic to human T-24 bladder carcinoma cells (IC50 = 0.05 µM in vitro) but has poor pharmacological properties and is 2-fold less potent in stabilizing microtubules compared to epothilone B .1

This information has been provided by Cayman Chemical

References

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
Sorangium cellulosum (#56)
Epothilones, a new class of microtubule-stabilizing agents with a taxol-like mechanism of action.,
Cancer Res, 1995
Pubmed ID: 7757983
Sorangium cellulosum (#56)
Towards the synthesis of epothilone A: Enantioselective preparation of the thiazole sidechain and macrocyclic ring closure,
Tetrahedron Letts, 1997

String Representations

InChiKey (Click to copy)
HESCAJZNRMSMJG-KKQRBIROSA-N
InChi (Click to copy)
InChI=1S/C26H39NO6S/c1-14-8-7-9-19-21(32-19)11-20(15(2)10-18-13-34-17(4)27-18)33-23(29)12-22(28)26(5,6)25(31)16(3)24(14)30/h10,13-14,16,19-22,24,28,30H,7-9,11-12H2,1-6H3/b15-10+/t14-,16+,19+,20-,21-,22-,24-/m0/s1
SMILES (Click to copy)
C1(N=C(SC=1)C)/C=C(/[C@H]1OC(=O)C[C@@H](C(C([C@@H]([C@H]([C@@H](C)CCC[C@@]2([H])O[C@@]2([H])C1)O)C)=O)(C)C)O)\C

Other Databases

KEGG ID
CHEBI ID
PubChem CID
Cayman ID
PDB ID

Calculated Physicochemical Properties

Heavy Atoms 34
Rings 3
Aromatic Rings 1
Rotatable Bonds 2
Van der Waals Molecular Volume 479.43
Topological Polar Surface Area 111.32
Hydrogen Bond Donors 2
Hydrogen Bond Acceptors 7
logP 5.52
Molar Refractivity 133.82

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Created at
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Updated at
3rd Apr 2025