Structure Database (LMSD)

Common Name
PS 17:0/18:1(9Z)-d5
Systematic Name
1-heptadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphoserine-1,1,2,3,3-d5
Synonyms
  • 1-heptadecanoyl-2-oleoyl-sn-glycero(d5)-3-phospho- L-serine
LM ID
LMGP03010989
Formula
C41H73D5NO10P
Exact Mass
Calculate m/z
780.567719
Status
Curated
Show lipids differing only in stereochemistry/bond geometry
Predict MS/MS spectrum (Neg. Mode)

Classification

Category
Main Class
Sub Class
Glycerophospholipids [GP]
Glycerophosphoserines [GP03]
Diacylglycerophosphoserines [GP0301]

References

Taxonomy Information

Curated from
NCBI taxonomy class
Reference
synthetic construct (#32630)
Synthetic deuterated standard

String Representations

InChiKey (Click to copy)
UNBDIKFARPKNLC-NOZLCFKKSA-N
InChi (Click to copy)
InChI=1S/C41H78NO10P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-40(44)52-37(35-50-53(47,48)51-36-38(42)41(45)46)34-49-39(43)32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h17,19,37-38H,3-16,18,20-36,42H2,1-2H3,(H,45,46)(H,47,48)/b19-17-/t37-,38+/m1/s1/i34D2,35D2,37D
SMILES (Click to copy)
[C@](C([2H])([2H])OP(=O)(O)OC[C@](C(O)=O)([H])N)([2H])(OC(CCCCCCC/C=C\CCCCCCCC)=O)C([2H])([2H])OC(CCCCCCCCCCCCCCCC)=O

Other Databases

PubChem CID
146171625
Avanti ID
858151-170-181-ps-d5

Calculated Physicochemical Properties

Heavy Atoms 53
Rings
Aromatic Rings
Rotatable Bonds 42
Van der Waals Molecular Volume 826.03
Topological Polar Surface Area 171.68
Hydrogen Bond Donors 3
Hydrogen Bond Acceptors 11
logP 12.49
Molar Refractivity 214.92

Admin

Created at
24th Mar 2025
Updated at
11th Nov 2025
LIPID MAPS® abbreviations for glycerophospholipids (GP)

The LIPID MAPS® glycerophospholipid abbreviations (PC, PE, etc.) are used here to refer to species with one or two radyl side-chains where the structures of the side chains are indicated within parentheses in the 'Headgroup(sn1/sn2)' format (e.g. PC(16:0/18:1(9Z)). By default, R stereochemistry at the C-2 carbon of glycerol and attachment of the headgroup at the sn3 position is assumed. Also, acyl chains are assumed by default. The 'O-' prefix is used to indicate the presence of an alkyl ether substituent e.g. PC(O-16:0/18:1(9Z)), whereas the 'P-' prefix is used for the 1Z-alkenyl ether (Plasmalogen) substituent e.g. PC(P-16:0/18:1(9Z)).

For molecules with opposite (S) stereochemistry at C2 of the glycerol group and attachment of the headgroup at the sn1 position, the stereochemistry specification of [S] is appended to the abbreviation. The 'Headgroup(sn3/sn2)' abbreviation format is used.

For molecules with unknown stereochemistry at the C-2 carbon of the glycerol group, the stereochemistry specification of [U] is appended to the abbreviation and the structure is drawn with C-2 stereochemistry unspecified.