Gene/Proteome Database (LMPD)

LMPD ID
LMP011736
Gene ID
405762
Species
Danio rerio (Zebrafish)
Gene Name
caudal type homeobox 1a
Gene Symbol
cdx1a
Synonyms
cdx2
Chromosome
14

Proteins

caudal type homeobox 1a
Refseq ID NP_998001
Protein GI 56605944
UniProt ID Q8AXR4
mRNA ID NM_212836
Length 228
RefSeq Status PROVISIONAL
MSVSYLLDTAMYGNPARHLNLSQPHLNVYPSAPYPDYSGYHPGPALGNDLHHTGSSWSPGFGPGSRDDWPPLYGHGTGHSLPANGVEVSVLPSVDQGLLSGAPVDREEPQDWMRRSAVPTNPGGKTRTKDKYRVVYSDVQRLELEKEFHFSRYITIRRKAELAGTLNLSERQVKIWFQNRRAKERKMNKKRLQQVQQSSSGLANTTTVSSSDSGLMTDNISSSIKEEY

Gene Information

Entrez Gene ID
405762
Gene Name
caudal type homeobox 1a
Gene Symbol
cdx1a
Species
Danio rerio

Gene Ontology (GO Annotations)

GO ID Source Type Description
GO:0005634 IEA:UniProtKB-SubCell C nucleus
GO:0043565 IEA:InterPro F sequence-specific DNA binding
GO:0009948 IGI:ZFIN P anterior/posterior axis specification
GO:0009952 IGI:ZFIN P anterior/posterior pattern specification
GO:0030097 IGI:ZFIN P hemopoiesis
GO:0021906 IMP:ZFIN P hindbrain-spinal cord boundary formation
GO:0031016 IGI:ZFIN P pancreas development
GO:0048793 IGI:ZFIN P pronephros development
GO:0006355 IEA:InterPro P regulation of transcription, DNA-templated
GO:0048384 IGI:ZFIN P retinoic acid receptor signaling pathway
GO:0021903 IGI:ZFIN P rostrocaudal neural tube patterning
GO:0001756 IGI:ZFIN P somitogenesis

Domain Information

InterPro Annotations

Accession Description
IPR006820 Caudal_activation_dom
IPR000047 Helix-turn-helix motif
IPR001356 Homeobox domain
IPR017970 Homeobox, conserved site
IPR020479 Homeobox_metazoa
IPR009057 Homeodomain-like

UniProt Annotations

Entry Information

Gene Name
caudal type homeobox 1a
Protein Entry
Q8AXR4_DANRE
UniProt ID
Q8AXR4
Species
Zebrafish

Comments

Comment Type Description
Similarity Contains homeobox DNA-binding domain.
Subcellular Location Nucleus {ECO:0000256|RuleBase:RU000682, ECO:0000256|SAAS:SAAS00159552}.

Identical and Related Proteins

Unique RefSeq proteins for LMP011736 (as displayed in Record Overview)

Protein GI Database Accession Length Protein Name
56605944 RefSeq NP_998001 228 caudal type homeobox 1a

Identical Sequences to LMP011736 proteins

Reference Database Accession Length Protein Name
GI:56605944 DBBJ BAC54033.2 228 homeodomain protein Cdx1a [Danio rerio]
GI:56605944 GenBank AAI15218.1 228 Cdx1a protein [Danio rerio]

Related Sequences to LMP011736 proteins

Reference Database Accession Length Protein Name
GI:56605944 EMBL CDQ68201.1 252 unnamed protein product [Oncorhynchus mykiss]
GI:56605944 GenBank AAI42878.1 255 Cdx1b protein [Danio rerio]
GI:56605944 RefSeq NP_001092232.1 255 homeobox protein CDX-1 [Danio rerio]
GI:56605944 RefSeq XP_006631948.1 258 PREDICTED: homeobox protein CDX-1-like [Lepisosteus oculatus]
GI:56605944 RefSeq XP_007232279.1 258 PREDICTED: homeobox protein CDX-1-like [Astyanax mexicanus]
GI:56605944 RefSeq XP_005173127.2 149 PREDICTED: homeobox protein CDX-1-like [Danio rerio]