Gene/Proteome Database (LMPD)

LMPD ID
LMP011478
Gene ID
30506
Species
Danio rerio (Zebrafish)
Gene Name
nuclear receptor subfamily 6, group A, member 1a
Gene Symbol
nr6a1a
Synonyms
gcnf; nr6a1; zfGCNF
Chromosome
8

Proteins

nuclear receptor subfamily 6 group A member 1-A
Refseq ID NP_571331
Protein GI 118766323
UniProt ID Q9PU65
mRNA ID NM_131256
Length 477
RefSeq Status PROVISIONAL
MVDKTHETEFSKKQLEASSSGHGGVLIDAEENGIHDQAEQRSCLICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCEMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPGGRNKSIGPVQISDEEIERIMSGQEFKDEANMPEHTWGNNGDSDHSSPGNGVSDGNQPSPVSTLSSNRSVELNGYTTALREQYIGNAMAQHYQFLPHLFGYAAQPRSLYPQSHTLIGQLVAAEDLAPLGTPMLIEDGYRVTQVELFALLCRLADELLFRQISWIKKLPFFCDLSIEDYTRLLSATWQELILLACLTVYSAQVLGDLANVTHKYTPSDDELHSFSEDGMEVMEKLIYLFRKFHQLKVSNEEYACMKAINFLNQDIRGLTNVTQLEQLNKRYWYVCQDYTEYKYPHQPKRFPEIMMCLPEIRCIAGKLVNIPLEQLPLLFKAVLHSCKSSLSSYRTSSSPCVTKGTAPAN

Gene Information

Entrez Gene ID
30506
Gene Name
nuclear receptor subfamily 6, group A, member 1a
Gene Symbol
nr6a1a
Species
Danio rerio

Gene Ontology (GO Annotations)

GO ID Source Type Description
GO:0005737 ISS:UniProtKB C cytoplasm
GO:0005634 ISS:UniProtKB C nucleus
GO:0042803 ISS:UniProtKB F protein homodimerization activity
GO:0043565 ISS:UniProtKB F sequence-specific DNA binding
GO:0003700 IEA:InterPro F sequence-specific DNA binding transcription factor activity
GO:0003707 IEA:InterPro F steroid hormone receptor activity
GO:0008270 IEA:InterPro F zinc ion binding
GO:0009952 ISS:UniProtKB P anterior/posterior pattern specification
GO:0016477 ISS:UniProtKB P cell migration
GO:0030917 ISS:UniProtKB P midbrain-hindbrain boundary development
GO:0022008 ISS:UniProtKB P neurogenesis
GO:0048513 ISS:UniProtKB P organ development
GO:0006351 IEA:UniProtKB-KW P transcription, DNA-templated

Domain Information

InterPro Annotations

Accession Description
IPR008946 Nuclear hormone receptor, ligand-binding
IPR000536 Nuclear hormone receptor, ligand-binding, core
IPR001723 Steroid hormone receptor
IPR013088 Zinc finger, NHR/GATA-type
IPR001628 Zinc finger, nuclear hormone receptor-type

UniProt Annotations

Entry Information

Gene Name
nuclear receptor subfamily 6, group A, member 1a
Protein Entry
Q9PU65_DANRE
UniProt ID
Q9PU65
Species
Zebrafish

Comments

Comment Type Description
Function Probable orphan nuclear receptor. Binds to a response element containing repeats of the motif 5'-AGGTCA-3' (By similarity).
Similarity Belongs to the nuclear hormone receptor family. NR6 subfamily.
Similarity Contains 1 nuclear receptor DNA-binding domain.
Subcellular Location Nucleus .
Subunit Homodimer.
Tissue Specificity Expressed in germ cells, being predominant in previtellogenic oocytes in the ovary and in spermatocytes in the testis.

Identical and Related Proteins

Unique RefSeq proteins for LMP011478 (as displayed in Record Overview)

Protein GI Database Accession Length Protein Name
118766323 RefSeq NP_571331 477 nuclear receptor subfamily 6 group A member 1-A

Identical Sequences to LMP011478 proteins

Reference Database Accession Length Protein Name
GI:118766323 EMBL CAB58352.2 477 germ cell nuclear factor [Danio rerio]
GI:118766323 SwissProt Q9PU65.2 477 RecName: Full=Nuclear receptor subfamily 6 group A member 1-A; AltName: Full=Germ cell nuclear factor A; Short=GCNF-A; Short=zfGCNF [Danio rerio]

Related Sequences to LMP011478 proteins

Reference Database Accession Length Protein Name
GI:118766323 GenBank AAI62651.1 448 Nr6a1a protein [Danio rerio]
GI:118766323 RefSeq XP_006640794.1 494 PREDICTED: nuclear receptor subfamily 6 group A member 1-A-like [Lepisosteus oculatus]
GI:118766323 RefSeq XP_007231566.1 517 PREDICTED: nuclear receptor subfamily 6 group A member 1-A-like [Astyanax mexicanus]
GI:118766323 RefSeq XP_007557811.1 484 PREDICTED: nuclear receptor subfamily 6 group A member 1 isoform X2 [Poecilia formosa]
GI:118766323 RefSeq XP_008282343.1 451 PREDICTED: nuclear receptor subfamily 6 group A member 1 [Stegastes partitus]
GI:118766323 RefSeq XP_008415584.1 492 PREDICTED: nuclear receptor subfamily 6 group A member 1 isoform X1 [Poecilia reticulata]