Gene/Proteome Database (LMPD)

LMPD ID
LMP010984
Gene ID
828776
Species
Arabidopsis thaliana (Arabidopsis)
Gene Name
glycerophosphoryl diester phosphodiesterase-like 3
Gene Symbol
SHV3
Synonyms
F10M23.30; F10M23_30; GLYCEROPHOSPHODIESTERASE-LIKE 2; GPDL2; MRH5; MUTANT ROOT HAIR 5; SHAVEN 3; SHV3
Alternate Names
glycerophosphoryl diester phosphodiesterase-like 3
Chromosome
4
EC Number
3.1.4.46
Summary
Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development.
Orthologs
View orthologs and multiple alignments for SHV3

Proteins

glycerophosphoryl diester phosphodiesterase-like 3
Refseq ID NP_567755
Protein GI 18416801
UniProt ID Q9SZ11
mRNA ID NM_118803
Length 759
RefSeq Status REVIEWED
MRGLLRASSLLLCGVILIQLLAAQIHAQSKKPKSPWPTLTGDPPLVIARGGFSGLFPDSSYDAYNFAILTSVPDAVLWCDVQLTKDALGICFPDLTMRNSSSIEAVYPTRQKSYPVNGVPTSGWFTIDFSLKDLKDVNLIRGILSRSEKFDGNSNPIMTVQSVSTQMKPSFFWLNVQHDAFYAQHNLSMSSFLVAASKTVLIDFISSPEVNFFKKIAGRFGRNGPSLVFRFLGQDEFEPTTNRTYGSILSNLTFVKTFASGILVPKSYILPLDDQQYLLPHTSLVQDAHKAGLEVFVSGFANDIDIAHDYSFDPVSEYLSFVDNGNFSVDGVLSDFPITASASLDCFSHVGRNATKQVDFLVITKDGASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLTAFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFSLSDFLSLAKNSTSLSGVLISVENAAYLREEQGLDVVKAVLDTLTQTGYSNSTATKVMIQSTNSSVLVDFKKQSQYETVYKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQTNVVEKLQKSQLPVYVELFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARYKRNLCLGRKETIPYMAPAQPGALLTLVSPTAFPPAEAPNPVFTDADVTEPPLPPVTAKAPTSSPGTPSTNAQAPSGQTRITLSLLLSVFAMVLASLLLL

Gene Information

Entrez Gene ID
828776
Gene Name
glycerophosphoryl diester phosphodiesterase-like 3
Gene Symbol
SHV3
Species
Arabidopsis thaliana

Gene Ontology (GO Annotations)

GO ID Source Type Description
GO:0031225 TAS:TAIR C anchored component of membrane
GO:0046658 IDA:TAIR C anchored component of plasma membrane
GO:0009505 IDA:TAIR C plant-type cell wall
GO:0005886 IDA:TAIR C plasma membrane
GO:0008889 IEA:UniProtKB-EC F glycerophosphodiester phosphodiesterase activity
GO:0009932 IMP:TAIR P cell tip growth
GO:0006071 IEA:UniProtKB-KW P glycerol metabolic process
GO:0010442 IGI:TAIR P guard cell morphogenesis
GO:0006629 IEA:InterPro P lipid metabolic process
GO:0052541 IGI:TAIR P plant-type cell wall cellulose metabolic process
GO:0010053 IMP:TAIR P root epidermal cell differentiation
GO:0048765 IMP:TAIR P root hair cell differentiation
GO:0010026 IGI:TAIR P trichome differentiation

Domain Information

InterPro Annotations

Accession Description
IPR004129 Glycerophosphoryl diester phosphodiesterase
IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain

UniProt Annotations

Entry Information

Gene Name
glycerophosphoryl diester phosphodiesterase-like 3
Protein Entry
GPDL3_ARATH
UniProt ID
Q9SZ11
Species
Arabidopsis

Comments

Comment Type Description
Catalytic Activity A glycerophosphodiester + H(2)O = an alcohol + sn-glycerol 3-phosphate. {ECO:0000250|UniProtKB:Q7Y208}.
Disruption Phenotype Defective in root hair formation (PubMed:16367956, PubMed:18718934). This phenotype is partially suprressed by application of exogenous borate (PubMed:18718934). {ECO:0000269|PubMed:16367956, ECO:0000269|PubMed:18718934}.
Function Involved in primary cell wall organization. Required for the accumulation of crystalline cellulose. {ECO:0000269|PubMed:18718934}.
Sequence Caution Sequence=CAB36515.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAB79524.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Similarity Belongs to the glycerophosphoryl diester phosphodiesterase family. {ECO:0000305}.
Similarity Contains 2 GP-PDE domains. {ECO:0000305}.
Subcellular Location Cell membrane {ECO:0000269|PubMed:18718934}; Lipid-anchor, GPI-anchor {ECO:0000269|PubMed:12805588, ECO:0000269|PubMed:14517339, ECO:0000269|PubMed:16602701}.
Tissue Specificity Expressed in roots, shoots, rosette and cauline leaves, stems, flowers and siliques. {ECO:0000269|PubMed:18718934, ECO:0000269|PubMed:21323773}.

Identical and Related Proteins

Unique RefSeq proteins for LMP010984 (as displayed in Record Overview)

Protein GI Database Accession Length Protein Name
18416801 RefSeq NP_567755 759 glycerophosphoryl diester phosphodiesterase-like 3

Identical Sequences to LMP010984 proteins

Reference Database Accession Length Protein Name
GI:18416801 EMBL CBC38067.1 759 unnamed protein product [Arabidopsis thaliana]
GI:18416801 EMBL CBC76141.1 759 unnamed protein product [Arabidopsis thaliana]
GI:18416801 GenBank AEE85238.1 759 glycerophosphoryl diester phosphodiesterase-like 3 [Arabidopsis thaliana]
GI:18416801 GenBank AFX49769.1 759 Sequence 51602 from patent US 8299318
GI:18416801 GenBank AGF14448.1 759 Sequence 13867 from patent US 8362325
GI:18416801 SwissProt Q9SZ11.3 759 RecName: Full=Glycerophosphodiester phosphodiesterase GDPDL3; AltName: Full=Glycerophosphodiester phosphodiesterase-like 3; Short=ATGDPDL3; AltName: Full=Glycerophosphodiesterase-like 2; AltName: Full=Protein MUTANT ROOT HAIR 5; AltName: Full=Protein SHAVEN 3; Flags: Precursor [Arabidopsis thaliana]

Related Sequences to LMP010984 proteins

Reference Database Accession Length Protein Name
GI:18416801 EMBL CAB36515.1 770 putative protein [Arabidopsis thaliana]
GI:18416801 EMBL CAB79524.1 770 putative protein [Arabidopsis thaliana]
GI:18416801 EMBL CBC04220.1 759 unnamed protein product [Arabidopsis thaliana]
GI:18416801 EMBL CBC01337.1 759 unnamed protein product [Arabidopsis thaliana]
GI:18416801 EMBL CBC06268.1 759 unnamed protein product [Arabidopsis thaliana]
GI:18416801 EMBL CBC38093.1 759 unnamed protein product [Arabidopsis thaliana]