Gene/Proteome Database (LMPD)
LMPD ID
LMP010872
Gene ID
Species
Arabidopsis thaliana (Arabidopsis)
Gene Name
phospholipase D beta 1
Gene Symbol
Synonyms
PHOSPHOLIPASE D; phospholipase D beta 1; PLDBETA; PLDBETA1; T6D20.10; T6D20_10
Alternate Names
phospholipase D beta 1
Chromosome
2
EC Number
3.1.4.4
Summary
phospholipase D (PLDbeta)
Orthologs
Proteins
| phospholipase D beta 1 | |
|---|---|
| Refseq ID | NP_565963 |
| Protein GI | 30688872 |
| UniProt ID | P93733 |
| mRNA ID | NM_129765 |
| Length | 1083 |
| RefSeq Status | REVIEWED |
| MDNHGPRYPYPYGQYPYPYPYPAPYRPPSSEPYPPPPTNQYSAPYYPYPPPPYATPPPYASPPPPHQHTSGSHSGPLDYSHNPQPSSLAAAPPEYHRHSFDYQPSPYPYQPQGNFGAYGPPPPHYSYQEPAQYPPPETKPQEPLPPPQQTQGFQEYRRQDCLSTGGTGHDNVSNSGSSYPPVDELLGGLHISTNQPGPSVPQLSSLPSNSWQSRPGDLYGYPNSSFPSNSHLPQLGRVDSSSSYYASTESPHSADMQMTLFGKGSLKVLLLHGNLDIWIYHAKNLPNMDMFHKTLGDMFGRLPGKIEGQLTSKITSDPYVSVSVAGAVIGRTYVMSNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGLVTIPVEQIYSGAKIEGTYPILNSNGKPCKPGANLSLSIQYTPMDKLSVYHHGVGAGPDYQGVPGTYFPLRKGGTVRLYQDAHVPEGMLPGIRLDNGMSYEHGKCWHDMFDAIRQARRLIYITGWSVWHKVKLIRDKLGPASECTLGELLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRNAGKRHSWVKQREVGTIYTHHQKNVIVDADAGGNRRKIIAFVGGLDLCDGRYDTPQHPLFRTLQTIHKDDFHNPTFTGNLSGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKAAKPSGIKKFKTSYDDALLRIDRIPDILGVSDTPTVSENDPEAWHVQIFRSIDSNSVKGFPKDPKDATCKNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFIGSSYNWNAHKDIGANNLIPMEIALKIAEKIRANERFAAYIVIPMWPEGVPTGAATQRILYWQHKTIQMMYETIYKALVETGLEGAFSPQDYLNFFCLGNREMVDGIDNSGTGSPSNANTPQALSRKSRRFMVYVHSKGMVVDDEYVVIGSANINQRSMEGTRDTEIAMGAYQPQHTWARKHSGPRGQIYGYRMSLWAEHMATLDDCFTQPESIECVRKVRTMGERNWKQFAAEEVSDMRGHLLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGSFIAIQENLTI | |
Gene Information
Entrez Gene ID
Gene Name
phospholipase D beta 1
Gene Symbol
Species
Arabidopsis thaliana
Gene Ontology (GO Annotations)
| GO ID | Source | Type | Description |
|---|---|---|---|
| GO:0005737 | IEA:UniProtKB-KW | C | cytoplasm |
| GO:0016020 | IEA:UniProtKB-KW | C | membrane |
| GO:0009506 | IDA:TAIR | C | plasmodesma |
| GO:0070290 | IEA:UniProtKB-EC | F | N-acylphosphatidylethanolamine-specific phospholipase D activity |
| GO:0005546 | IDA:TAIR | F | phosphatidylinositol-4,5-bisphosphate binding |
| GO:0004630 | IDA:TAIR | F | phospholipase D activity |
| GO:0009816 | IEP:TAIR | P | defense response to bacterium, incompatible interaction |
| GO:0016042 | IEA:UniProtKB-KW | P | lipid catabolic process |
| GO:0046686 | IEP:TAIR | P | response to cadmium ion |
KEGG Pathway Links
| KEGG Pathway ID | Description |
|---|---|
| ath04144 | Endocytosis |
| ath00565 | Ether lipid metabolism |
| ath00564 | Glycerophospholipid metabolism |
REACTOME Pathway Links
| REACTOME Pathway ID | Description |
|---|---|
| 6254320 | Synthesis of PG |
Domain Information
UniProt Annotations
Entry Information
Comments
| Comment Type | Description |
|---|---|
| Catalytic Activity | A phosphatidylcholine + H(2)O = choline + a phosphatidate. |
| Cofactor | Name=Ca(2+); Xref=ChEBI:CHEBI:29108; Note=Ca(2+). Requires micromolar level (PIP2-dependent).; |
| Domain | C2 domain is a calcium-binding fold, and the binding promotes the protein association with membranes. In PLD beta, all the calcium-coordinating acidic amino acids are conserved. |
| Enzyme Regulation | Inhibited by neomycin. |
| Function | Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. Plays an important role in various cellular processes, including phytohormone action, vesicular trafficking, secretion, cytoskeletal arrangement, meiosis, tumor promotion, pathogenesis, membrane deterioration and senescence. Can use phosphatidylserine or N-acylphosphatidylethanolamine as substrates. |
| Induction | Activated by wounding, methyl jasmonate, heavy metal, osmotic and salt stresses. |
| Sequence Caution | Sequence=AAB63542.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAC49656.2; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305}; |
| Similarity | Belongs to the phospholipase D family. C2-PLD subfamily. {ECO:0000305}. |
| Similarity | Contains 1 C2 domain. {ECO:0000255|PROSITE- ProRule:PRU00041}. |
| Similarity | Contains 2 PLD phosphodiesterase domains. {ECO:0000255|PROSITE-ProRule:PRU00153}. |
| Subcellular Location | Cytoplasm {ECO:0000250}. Membrane {ECO:0000250}; Peripheral membrane protein {ECO:0000250}. |
| Tissue Specificity | Expressed in stems, and to a lower amount in leaves, flowers and siliques. |
Identical and Related Proteins
Unique RefSeq proteins for LMP010872 (as displayed in Record Overview)
| Protein GI | Database | Accession | Length | Protein Name |
|---|---|---|---|---|
| 30688872 | RefSeq | NP_565963 | 1083 | phospholipase D beta 1 |
Identical Sequences to LMP010872 proteins
| Reference | Database | Accession | Length | Protein Name |
|---|---|---|---|---|
| GI:30688872 | GenBank | AEC10063.1 | 1083 | phospholipase D beta 1 [Arabidopsis thaliana] |
| GI:30688872 | SwissProt | P93733.4 | 1083 | RecName: Full=Phospholipase D beta 1; Short=AtPLDbeta1; Short=PLD beta 1; Short=PLDbeta [Arabidopsis thaliana] |
Related Sequences to LMP010872 proteins
| Reference | Database | Accession | Length | Protein Name |
|---|---|---|---|---|
| GI:30688872 | GenBank | EOA28834.1 | 1090 | hypothetical protein CARUB_v10025073mg [Capsella rubella] |
| GI:30688872 | RefSeq | XP_006295936.1 | 1090 | hypothetical protein CARUB_v10025073mg [Capsella rubella] |
| GI:30688872 | RefSeq | XP_010508627.1 | 1117 | PREDICTED: phospholipase D beta 1 isoform X1 [Camelina sativa] |
| GI:30688872 | RefSeq | XP_010508628.1 | 1117 | PREDICTED: phospholipase D beta 1 isoform X1 [Camelina sativa] |
| GI:30688872 | RefSeq | XP_010508630.1 | 1117 | PREDICTED: phospholipase D beta 1 isoform X1 [Camelina sativa] |
| GI:30688872 | RefSeq | XP_010508631.1 | 1093 | PREDICTED: phospholipase D beta 1 isoform X2 [Camelina sativa] |