Microarray analysis of RAW 264.7 cells treated with Kdo2-lipid A (KLA) and compactin (full time course)

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Kdo2-Lipid A / compactin gene array data - treatment:control ratios

KEGG pathway: Non-homologous end-joining (mmu03450)

Legend:graph_icon: View data/graphs for replicates
Gene symbol    Time course plot Accession Description Treatment 30min 1hr 2hr 4hr 8hr 12hr 24hr
Dclre1c
KLA  Compactin  Compactin+KLA
NM_146114 DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) (Dclre1c), transcript variant 1, mRNA [NM_146114] KLA0.910 0.720 0.850 1.540 1.500 1.530 1.170
Compactin0.950 0.950 0.850 0.900 0.910 0.790 0.930
KLA/Compactin0.980 0.710 0.600 1.480 1.470 1.450 1.050
Dclre1c
KLA  Compactin  Compactin+KLA
NM_175683 DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) (Dclre1c), transcript variant 2, mRNA [NM_175683] KLA0.880 0.920 0.990 1.310 1.570 1.460 0.690
Compactin0.870 0.970 0.930 0.920 0.870 0.800 0.910
KLA/Compactin0.900 0.890 0.810 1.290 1.750 1.290 0.640
Dclre1c
KLA  Compactin  Compactin+KLA
NM_175683 DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) (Dclre1c), transcript variant 2, mRNA [NM_175683] KLA1.000 0.990 0.950 1.050 1.130 0.990 0.870
Compactin1.000 1.010 1.060 0.960 0.900 0.880 1.020
KLA/Compactin1.060 0.960 0.940 1.090 1.140 1.030 0.870
Dntt
KLA  Compactin  Compactin+KLA
NM_001043228 deoxynucleotidyltransferase, terminal (Dntt), transcript variant 2, mRNA [NM_001043228] KLA1.050 0.980 1.000 1.000 1.010 0.960 1.000
Compactin1.100 0.940 1.000 1.000 1.030 1.010 1.010
KLA/Compactin0.970 1.010 0.970 1.000 0.910 0.990 1.020
Dntt
KLA  Compactin  Compactin+KLA
NM_009345 deoxynucleotidyltransferase, terminal (Dntt), transcript variant 1, mRNA [NM_009345] KLA1.050 0.950 1.050 1.020 1.030 0.990 1.040
Compactin1.030 1.030 0.960 1.020 1.030 1.020 1.020
KLA/Compactin1.010 1.020 1.000 1.030 1.040 1.100 1.000
Dntt
KLA  Compactin  Compactin+KLA
NM_009345 deoxynucleotidyltransferase, terminal (Dntt), transcript variant 1, mRNA [NM_009345] KLA1.060 0.970 0.980 1.080 1.000 1.000 1.010
Compactin0.920 0.950 0.970 0.980 1.100 1.040 0.950
KLA/Compactin0.860 1.070 1.000 0.900 1.100 0.990 1.050
Dntt
KLA  Compactin  Compactin+KLA
NM_009345 deoxynucleotidyltransferase, terminal (Dntt), transcript variant 1, mRNA [NM_009345] KLA1.130 0.960 0.910 1.040 1.020 0.960 1.020
Compactin0.890 0.980 0.920 1.020 0.990 1.090 0.950
KLA/Compactin0.940 0.970 0.930 0.960 0.960 0.980 1.130
Fen1
KLA  Compactin  Compactin+KLA
NM_007999 flap structure specific endonuclease 1 (Fen1), mRNA [NM_007999] KLA1.140 1.030 0.830 0.610 0.620 0.450 0.470
Compactin1.260 1.050 1.300 1.130 1.080 0.930 0.650
KLA/Compactin1.230 1.020 0.940 0.680 0.530 0.370 0.400
Lig4
KLA  Compactin  Compactin+KLA
NM_176953 ligase IV, DNA, ATP-dependent (Lig4), mRNA [NM_176953] KLA0.890 0.780 0.970 0.890 1.060 1.040 0.950
Compactin0.930 0.990 1.040 0.910 0.930 0.980 1.070
KLA/Compactin0.880 0.830 0.990 0.940 0.950 0.930 0.870
Lig4
KLA  Compactin  Compactin+KLA
NM_176953 ligase IV, DNA, ATP-dependent (Lig4), mRNA [NM_176953] KLA1.020 0.910 0.940 0.960 1.060 1.040 0.990
Compactin1.040 1.030 1.000 1.070 1.070 1.000 1.090
KLA/Compactin1.060 0.900 0.910 1.060 1.020 1.070 0.880
Mre11a
KLA  Compactin  Compactin+KLA
AK161013 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4022449A05 product:meiotic recombination 11 homolog A (S. cerevisiae), full insert sequence [AK161013] KLA1.010 0.790 0.810 0.730 0.740 0.730 0.910
Compactin0.930 1.010 0.960 0.990 0.940 0.860 0.840
KLA/Compactin0.970 0.810 0.820 0.750 0.680 0.700 0.870
Mre11a
KLA  Compactin  Compactin+KLA
AK161013 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4022449A05 product:meiotic recombination 11 homolog A (S. cerevisiae), full insert sequence [AK161013] KLA1.070 0.790 0.850 0.790 0.680 0.730 0.880
Compactin1.030 1.030 0.940 0.950 0.900 0.840 0.800
KLA/Compactin1.020 0.770 0.830 0.740 0.690 0.690 0.910
Mre11a
KLA  Compactin  Compactin+KLA
NM_018736 meiotic recombination 11 homolog A (S. cerevisiae) (Mre11a), mRNA [NM_018736] KLA0.820 0.910 0.950 1.100 0.880 0.740 1.370
Compactin0.900 0.850 0.810 0.760 1.100 1.040 0.880
KLA/Compactin0.910 0.950 0.890 0.980 0.690 0.900 1.610
Mre11a
KLA  Compactin  Compactin+KLA
NM_018736 meiotic recombination 11 homolog A (S. cerevisiae) (Mre11a), mRNA [NM_018736] KLA0.830 0.930 1.010 1.000 0.840 0.840 1.320
Compactin0.950 0.840 0.990 0.950 0.960 1.050 0.980
KLA/Compactin0.900 1.050 1.000 0.980 0.950 0.880 1.180
Mre11a
KLA  Compactin  Compactin+KLA
NM_018736 meiotic recombination 11 homolog A (S. cerevisiae) (Mre11a), mRNA [NM_018736] KLA0.920 0.980 0.860 0.970 0.820 0.780 1.080
Compactin0.900 0.940 1.060 0.930 0.950 0.970 0.870
KLA/Compactin0.950 0.970 1.000 0.920 0.780 0.800 1.060
Nhej1
KLA  Compactin  Compactin+KLA
NM_029342 nonhomologous end-joining factor 1 (Nhej1), mRNA [NM_029342] KLA1.080 1.120 1.040 1.030 0.670 0.740 0.670
Compactin1.010 1.050 1.050 1.140 1.100 1.030 1.030
KLA/Compactin1.080 1.020 1.020 0.940 0.800 0.820 0.700
Nhej1
KLA  Compactin  Compactin+KLA
NM_029342 nonhomologous end-joining factor 1 (Nhej1), mRNA [NM_029342] KLA1.230 1.160 1.140 1.030 0.790 0.880 0.740
Compactin1.190 1.150 1.130 1.180 1.090 1.040 1.040
KLA/Compactin1.250 1.090 1.110 1.060 0.900 0.820 0.810
Poll
KLA  Compactin  Compactin+KLA
NM_020032 polymerase (DNA directed), lambda (Poll), mRNA [NM_020032] KLA0.820 0.750 0.790 0.880 1.020 0.920 0.650
Compactin0.830 0.910 0.980 0.830 0.920 0.920 0.880
KLA/Compactin0.840 0.790 0.750 0.930 0.940 0.790 0.590
Poll
KLA  Compactin  Compactin+KLA
NM_020032 polymerase (DNA directed), lambda (Poll), mRNA [NM_020032] KLA1.090 0.900 0.940 0.920 1.080 0.900 0.740
Compactin1.010 1.100 1.140 1.060 0.980 1.100 0.830
KLA/Compactin0.980 0.970 0.890 0.860 0.930 0.990 0.650
Polm
KLA  Compactin  Compactin+KLA
NM_017401 polymerase (DNA directed), mu (Polm), mRNA [NM_017401] KLA0.860 1.040 2.520 1.880 2.500 3.100 2.510
Compactin0.820 1.030 1.010 0.960 1.090 1.080 1.090
KLA/Compactin0.890 0.940 2.640 2.420 2.410 3.000 2.980
Prkdc
KLA  Compactin  Compactin+KLA
124517705 protein kinase, DNA activated, catalytic polypeptide KLA1.120 1.160 1.010 0.680 0.580 0.740 0.520
Compactin1.070 1.010 1.200 1.150 1.120 0.980 1.010
KLA/Compactin1.280 1.180 0.930 0.820 0.550 0.600 0.440
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA0.920 1.110 0.790 0.730 0.750 0.690 0.590
Compactin1.010 0.840 0.980 0.880 1.070 1.120 0.950
KLA/Compactin0.970 1.050 0.930 0.730 0.640 0.640 0.550
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA0.950 1.090 0.830 0.710 0.680 0.700 0.560
Compactin0.990 0.920 0.910 0.940 1.060 1.090 0.950
KLA/Compactin0.920 0.940 0.790 0.730 0.570 0.690 0.540
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA0.980 1.080 0.830 0.740 0.650 0.730 0.590
Compactin0.870 0.990 1.030 0.830 1.070 1.040 1.030
KLA/Compactin0.900 0.970 0.880 0.750 0.580 0.630 0.560
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA0.990 0.950 0.900 0.720 0.640 0.730 0.600
Compactin0.930 0.940 0.920 0.940 1.110 0.920 0.970
KLA/Compactin0.920 1.090 0.820 0.770 0.720 0.720 0.590
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA0.990 1.100 0.920 0.830 0.650 0.720 0.640
Compactin0.970 0.920 1.010 1.090 1.060 1.020 1.010
KLA/Compactin1.050 1.120 0.820 0.780 0.670 0.710 0.590
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA1.040 1.120 1.020 0.830 0.710 0.760 0.620
Compactin1.060 1.030 1.200 1.240 1.160 1.080 1.030
KLA/Compactin1.130 1.110 0.950 0.790 0.660 0.700 0.570
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA1.070 1.110 0.890 0.780 0.620 0.710 0.600
Compactin0.940 1.010 1.020 1.060 1.110 1.060 1.020
KLA/Compactin1.010 1.080 0.870 0.790 0.640 0.690 0.570
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA1.080 1.100 0.910 0.780 0.680 0.770 0.610
Compactin0.980 0.980 1.060 1.070 1.030 1.080 0.960
KLA/Compactin1.030 1.040 0.910 0.770 0.680 0.670 0.510
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA1.100 1.020 0.890 0.800 0.600 0.730 0.620
Compactin0.890 0.890 1.020 0.950 1.120 1.030 0.990
KLA/Compactin0.980 1.060 0.830 0.780 0.620 0.660 0.510
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA1.200 1.120 0.960 0.850 0.690 0.780 0.650
Compactin0.930 1.000 1.060 1.050 1.000 0.980 1.120
KLA/Compactin1.050 1.010 1.000 0.770 0.660 0.770 0.550
Prkdc
KLA  Compactin  Compactin+KLA
NM_011159 protein kinase, DNA activated, catalytic polypeptide (Prkdc), mRNA [NM_011159] KLA1.250 1.280 1.010 0.820 0.700 0.850 0.630
Compactin1.090 1.090 1.060 1.100 1.210 1.110 0.950
KLA/Compactin1.190 1.130 0.960 0.910 0.760 0.740 0.530
Rad50
KLA  Compactin  Compactin+KLA
BC002033 RAD50 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:3491597), complete cds. [BC002033] KLA1.080 1.020 0.950 0.980 0.960 0.970 0.920
Compactin1.070 1.090 1.060 0.970 1.100 1.050 0.950
KLA/Compactin1.010 1.030 1.000 0.940 0.950 0.950 1.020
Rad50
KLA  Compactin  Compactin+KLA
NM_009012 RAD50 homolog (S. cerevisiae) (Rad50), mRNA [NM_009012] KLA1.240 1.130 0.970 0.690 0.710 0.660 0.730
Compactin1.380 1.120 1.130 1.180 1.140 1.050 0.840
KLA/Compactin1.400 1.090 0.940 0.760 0.730 0.710 0.770
Xrcc4
KLA  Compactin  Compactin+KLA
AK053612 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130114F22 product:XRCC4 homolog [Mus musculus], full insert sequence. [AK053612] KLA0.990 1.010 1.000 0.950 0.930 1.060 1.050
Compactin0.890 1.030 0.960 0.930 0.880 0.950 1.100
KLA/Compactin1.030 0.960 1.010 1.020 1.050 0.940 1.030
Xrcc4
KLA  Compactin  Compactin+KLA
NM_028012 X-ray repair complementing defective repair in Chinese hamster cells 4 (Xrcc4), mRNA [NM_028012] KLA0.930 0.940 1.020 1.240 0.930 0.970 1.350
Compactin0.910 0.970 0.910 0.870 0.970 0.930 1.010
KLA/Compactin0.830 1.060 0.960 1.090 1.110 1.100 1.490
Xrcc4
KLA  Compactin  Compactin+KLA
NM_028012 X-ray repair complementing defective repair in Chinese hamster cells 4 (Xrcc4), mRNA [NM_028012] KLA1.020 1.030 1.180 1.340 1.060 1.110 1.520
Compactin1.050 1.050 1.010 1.080 1.020 1.010 1.050
KLA/Compactin1.110 1.110 1.050 1.380 1.240 1.310 1.570
Xrcc4
KLA  Compactin  Compactin+KLA
NM_028012 X-ray repair complementing defective repair in Chinese hamster cells 4 (Xrcc4), mRNA [NM_028012] KLA1.150 1.220 1.210 1.520 1.150 1.060 1.400
Compactin1.240 1.040 1.120 1.080 1.060 0.990 1.090
KLA/Compactin1.190 1.060 1.160 1.440 1.250 1.300 1.420
Xrcc5
KLA  Compactin  Compactin+KLA
NM_009533 X-ray repair complementing defective repair in Chinese hamster cells 5 (Xrcc5), mRNA [NM_009533] KLA0.890 0.910 0.910 1.020 0.710 0.630 0.660
Compactin0.960 0.960 0.800 0.840 0.830 0.860 0.650
KLA/Compactin0.890 1.050 0.890 0.880 0.640 0.530 0.620
Xrcc6
KLA  Compactin  Compactin+KLA
NM_010247 X-ray repair complementing defective repair in Chinese hamster cells 6 (Xrcc6), mRNA [NM_010247] KLA0.870 0.940 1.020 0.690 0.460 0.680 0.930
Compactin0.920 0.950 0.930 0.960 0.930 0.980 0.870
KLA/Compactin0.940 1.000 0.940 0.660 0.550 0.600 0.810