Lipidomics studies on macrophages - bone marrow-derived macrophages treated with Kdo2-Lipid A

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technical replicates
LM_ID Name 0 hrs 6 hrs 24 hrs Units
  PC(32:0) 150 140 150 pmol/1E6 cells
  PC(32:1) 240 210 200 pmol/1E6 cells
  PC(32:2) 38 32 31 pmol/1E6 cells
  PC(34:0) 140 130 120 pmol/1E6 cells
  PC(34:1) 200 180 180 pmol/1E6 cells
  PC(34:2) 110 90 91 pmol/1E6 cells
  PC(34:3) 12 11 12 pmol/1E6 cells
  PC(36:0) 78 75 68 pmol/1E6 cells
  PC(36:1) 310 290 270 pmol/1E6 cells
  PC(36:1e)/PC(36:0p) 25 27 25 pmol/1E6 cells
  PC(36:2) 400 350 340 pmol/1E6 cells
  PC(36:2e)/PC(36:1p) 37 39 38 pmol/1E6 cells
  PC(36:3) 160 140 140 pmol/1E6 cells
  PC(36:3e)/PC(36:2p) 18 20 17 pmol/1E6 cells
  PC(36:4) 130 110 110 pmol/1E6 cells
  PC(36:4e)/PC(36:3p) 23 25 17 pmol/1E6 cells
  PC(38:2) 63 65 62 pmol/1E6 cells
  PC(38:3) 120 120 110 pmol/1E6 cells
  PC(38:3e)/PC(38:2p) 17 18 15 pmol/1E6 cells
  PC(38:4) 250 230 230 pmol/1E6 cells
  PC(38:5e)/PC(38:4p) 51 53 41 pmol/1E6 cells
  PC(38:6) 150 150 150 pmol/1E6 cells
  PC(40:3) 45 50 46 pmol/1E6 cells
  PC(40:4) 110 120 120 pmol/1E6 cells
  PC(40:5) 190 200 200 pmol/1E6 cells
  PC(40:6) 260 290 260 pmol/1E6 cells
  PA(32:0) 19 19 34 pmol/1E6 cells
  PA(32:1) 16 19 17 pmol/1E6 cells
  PA(34:0) 9.3 11 14 pmol/1E6 cells
  PA(34:1) 38 38 39 pmol/1E6 cells
  PA(34:2) 8 6.3 6.6 pmol/1E6 cells
  PA(36:0) 12 13 15 pmol/1E6 cells
  PA(36:1) 52 51 47 pmol/1E6 cells
  PA(36:2) 37 28 30 pmol/1E6 cells
  PA(36:3) 4.7 5.9 4.6 pmol/1E6 cells
  PA(36:4) 4.7 3.3 3.5 pmol/1E6 cells
  PA(38:1) 3.4 4.8 4.8 pmol/1E6 cells
  PA(38:2) 6.2 8.7 6.3 pmol/1E6 cells
  PA(38:3) 15 16 18 pmol/1E6 cells
  PA(38:4) 39 40 37 pmol/1E6 cells
  PA(40:3) 8.4 12 8.8 pmol/1E6 cells
  PA(40:4) 32 31 32 pmol/1E6 cells
  PA(40:5) 51 54 51 pmol/1E6 cells
  PA(40:6) 50 55 42 pmol/1E6 cells
  PS(32:0) 28 33 37 pmol/1E6 cells
  PS(32:1) 27 28 32 pmol/1E6 cells
  PS(34:0) 50 63 63 pmol/1E6 cells
  PS(34:1) 160 170 190 pmol/1E6 cells
  PS(34:2) 22 24 29 pmol/1E6 cells
  PS(34:3) 16 15 20 pmol/1E6 cells
  PS(36:0) 120 140 130 pmol/1E6 cells
  PS(36:1) 530 510 480 pmol/1E6 cells
  PS(36:2) 220 210 220 pmol/1E6 cells
  PS(36:3) 26 28 33 pmol/1E6 cells
  PS(36:4) 12 18 20 pmol/1E6 cells
  PS(36:5) 8.9 10 12 pmol/1E6 cells
  PS(38:0) 10 11 7.8 pmol/1E6 cells
  PS(38:1) 29 28 25 pmol/1E6 cells
  PS(38:2) 70 68 60 pmol/1E6 cells
  PS(38:3) 190 200 190 pmol/1E6 cells
  PS(38:4) 230 240 240 pmol/1E6 cells
  PS(38:5) 40 50 57 pmol/1E6 cells
  PS(38:6) 16 20 27 pmol/1E6 cells
  PS(40:1) 8.9 8.3 5.2 pmol/1E6 cells
  PS(40:2) 12 11 7.8 pmol/1E6 cells
  PS(40:3) 57 51 47 pmol/1E6 cells
  PS(40:4) 260 270 230 pmol/1E6 cells
  PS(40:5) 380 400 360 pmol/1E6 cells
  PS(40:6) 300 300 280 pmol/1E6 cells
  PS(40:7) 23 25 27 pmol/1E6 cells
  PE(32:0) 37 47 48 pmol/1E6 cells
  PE(32:0e) 38 46 43 pmol/1E6 cells
  PE(32:1) 100 100 120 pmol/1E6 cells
  PE(34:0) 43 54 45 pmol/1E6 cells
  PE(34:1) 140 160 150 pmol/1E6 cells
  PE(34:2) 55 59 58 pmol/1E6 cells
  PE(36:0) 66 77 61 pmol/1E6 cells
  PE(36:1) 150 180 160 pmol/1E6 cells
  PE(36:1e)/PE(36:0p) 24 24 25 pmol/1E6 cells
  PE(36:2) 160 170 180 pmol/1E6 cells
  PE(36:2e)/PE(36:1p) 49 57 51 pmol/1E6 cells
  PE(36:3) 66 72 86 pmol/1E6 cells
  PE(36:3e)/PE(36:2p) 37 39 35 pmol/1E6 cells
  PE(36:4) 58 70 72 pmol/1E6 cells
  PE(36:4e)/PE(36:3p) 51 49 43 pmol/1E6 cells
  PE(36:5e)/PE(36:4p) 42 80 66 pmol/1E6 cells
  PE(38:1e)/PE(38:0p) 25 17 20 pmol/1E6 cells
  PE(38:2) 45 51 43 pmol/1E6 cells
  PE(38:2e)/PE(38:1p) 9.1 17 16 pmol/1E6 cells
  PE(38:3) 130 140 140 pmol/1E6 cells
  PE(38:3e)/PE(38:2p) 9 17 18 pmol/1E6 cells
  PE(38:4) 220 220 250 pmol/1E6 cells
  PE(38:5) 97 120 120 pmol/1E6 cells
  PE(38:5e)/PE(38:4p) 20 45 32 pmol/1E6 cells
  PE(38:6) 69 67 69 pmol/1E6 cells
  PE(40:4) 210 400 410 pmol/1E6 cells
  PE(40:5) 42 76 83 pmol/1E6 cells
  PG(32:0) 6.6 9.1 11 pmol/1E6 cells
  PG(32:1) 12 8.1 8.3 pmol/1E6 cells
  PG(34:1) 31 28 22 pmol/1E6 cells
  PG(34:2) 86 75 67 pmol/1E6 cells
  PG(34:3) 120 110 100 pmol/1E6 cells
  PG(36:1) 66 55 48 pmol/1E6 cells
  PG(36:2) 60 50 41 pmol/1E6 cells
  PG(36:3) 25 21 17 pmol/1E6 cells
  PG(36:4) 100 85 74 pmol/1E6 cells
  PG(36:5) 400 340 320 pmol/1E6 cells
  PG(38:1) 15 13 11 pmol/1E6 cells
  PG(38:2) 13 12 9.8 pmol/1E6 cells
  PG(38:3) 8.6 7.8 6.4 pmol/1E6 cells
  PG(38:4) 24 22 20 pmol/1E6 cells
  PG(38:5) 140 110 100 pmol/1E6 cells
  PG(38:6) 190 170 150 pmol/1E6 cells
  PG(40:3) 10 11 8.8 pmol/1E6 cells
  PG(40:4) 31 30 24 pmol/1E6 cells
  PG(40:5) 19 17 15 pmol/1E6 cells
  PG(40:6) 18 17 15 pmol/1E6 cells
  PG(40:7) 17 17 15 pmol/1E6 cells
  PI(34:1) 67 62 51 pmol/1E6 cells
  PI(34:2) 4.9 4.7 4.4 pmol/1E6 cells
  PI(36:0) 4.2 1.8 1.2 pmol/1E6 cells
  PI(36:1) 6.5 5 6 pmol/1E6 cells
  PI(36:2) 10 - 11 pmol/1E6 cells
  PI(36:3) 3.7 3.8 4.3 pmol/1E6 cells
  PI(36:4) 5.9 6.2 7 pmol/1E6 cells
  PI(36:5) 2 2 1.8 pmol/1E6 cells
  PI(38:0) 2.9 1.4 0.75 pmol/1E6 cells
  PI(38:1) 4.8 1.3 0.64 pmol/1E6 cells
  PI(38:2) 2.1 1.3 1.2 pmol/1E6 cells
  PI(38:3) 12 7.7 6.3 pmol/1E6 cells
  PI(38:4) 33 27 24 pmol/1E6 cells
  PI(38:5) 13 13 13 pmol/1E6 cells
  PI(38:6) 2 1.9 1.8 pmol/1E6 cells
  PI(40:3) 2.6 1.2 1.4 pmol/1E6 cells
  PI(40:4) 3 1.8 1.4 pmol/1E6 cells
  PI(40:5) 4 2.8 2.9 pmol/1E6 cells
  PI(40:6) 2.4 2.3 2.4 pmol/1E6 cells
  PI(40:7) 1.3 1.4 1.3 pmol/1E6 cells

 

*:The units in the table and graphs correspond to the intensity of each species divided by the average intensity (peak area) of a set of odd-chain internal standards corresponding to that particular headgroup. No internal standards were available for the PI series so intensity of each species was divided by the the total PI intensity in this case. The amount of internal standard added to each sample in the time series and control experiments was identical. The relative intensity values were then normalized to the measured quantity of DNA present in each RAW cell preparation following treatment with and without Kdo2 lipid A for each time point.