chemaxon.struc.graphics
Class MAtomSetPoint

java.lang.Object
  chemaxon.struc.MObject
      chemaxon.struc.MPoint
          chemaxon.struc.graphics.MAtomSetPoint

All Implemented Interfaces:

java.lang.Cloneable, java.io.Serializable

public class MAtomSetPoint

extends MPoint

Point fixed to the location of one or more atoms.

Since:

Marvin 3.5, 07/05/2004

Version:

3.5, 07/06/2004

Author:

Peter Csizmadia

See Also:

Serialized Form

Field Summary

Fields inherited from class chemaxon.struc.MObject

PAINT_ANTIALIAS, PAINT_FOCUSED, TRANSFORM_DISTORT

Constructor Summary

MAtomSetPoint()
Contructs an empty point object.

MAtomSetPoint(MAtomSetPoint p)
Copy constructor.

MAtomSetPoint(MolAtom[] a)
Contructs a point object.

Method Summary

boolean	checkValidity(MDocument doc, java.util.Vector invec) Is it a valid object in the document?
java.lang.Object	clone() Creates a clone.
boolean	containsAtom(MolAtom a) Checks if the atom set contains the specified atom object.
boolean	equals(MAtomSetPoint o) Two points equal if their atoms equal.
boolean	equals(MPoint o) Two points equal if their atoms equal.
boolean	equals(java.lang.Object o) Two points equal if their atoms equal.
void	finishCloning(MDocument olddoc, MDocument newdoc) Finish cloning a document.
MolAtom[]	getAtoms() Gets the atoms.
MPoint	getPoint(int i) Gets the point.
double	getX() Gets the x coordinate.
double	getY() Gets the y coordinate.
double	getZ() Gets the z coordinate.
boolean	isTransformable() Is it a transformable object?
void	replaceAtom(MolAtom orig, MolAtom a) Replaces a contained atom with another one.
void	setAtoms(MolAtom[] a) Sets the atoms.
void	setXYZ(double x, double y, double z) Sets the atom coordinates.
void	transform(CTransform3D t, int opts) Does not perform any operation.

Methods inherited from class chemaxon.struc.MPoint

calcCenter, distanceFrom, getLocation, getPointCount, getPointRef, getPointRefCount, isChildOf, isInternalSelectable, paint

Methods inherited from class chemaxon.struc.MObject

addAttributeKeys, addCdataAttributeKeys, addNotify, distanceFrom, getAttribute, getBackground, getColor, getLineColor, hasBackground, hasColor, hasLineColor, isEmpty, isSelectableNow, isSelected, makeColor, makeColorString, removeChild, removeNotify, setAttribute, setBackground, setColor, setLineColor, setSelected, unselectContents

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MAtomSetPoint

public MAtomSetPoint()

Contructs an empty point object.

MAtomSetPoint

public MAtomSetPoint(MolAtom[] a)

Contructs a point object.

Parameters:

a - array of atoms

MAtomSetPoint

public MAtomSetPoint(MAtomSetPoint p)

Copy constructor.

Parameters:

p - the point

Method Detail

equals

public boolean equals(MAtomSetPoint o)

Two points equal if their atoms equal.

Parameters:

o - the other point

Returns:

true if they equal, false otherwise

equals

public boolean equals(MPoint o)

Two points equal if their atoms equal.

Overrides:

equals in class MPoint

Parameters:

o - the other point

Returns:

true if they equal, false otherwise

equals

public boolean equals(java.lang.Object o)

Two points equal if their atoms equal.

Overrides:

equals in class MPoint

Parameters:

o - the other point

Returns:

true if they equal, false otherwise

clone

public java.lang.Object clone()

Description copied from class: MObject

Creates a clone.

Overrides:

clone in class MPoint

setAtoms

public void setAtoms(MolAtom[] a)

Sets the atoms.

Parameters:

a - the atoms

getAtoms

public MolAtom[] getAtoms()

Gets the atoms.

Returns:

the atoms

containsAtom

public boolean containsAtom(MolAtom a)

Checks if the atom set contains the specified atom object.

Overrides:

containsAtom in class MObject

Returns:

true if the atom set contains the specified object, false otherwise

Since:

Marvin 3.5, 07/04/2004

replaceAtom

public void replaceAtom(MolAtom orig,
                        MolAtom a)

Replaces a contained atom with another one.

Overrides:

replaceAtom in class MObject

Parameters:

orig - the original atom

a - the new atom

Since:

Marvin 3.5, 07/04/2004

getX

public double getX()

Gets the x coordinate.

Overrides:

getX in class MPoint

Returns:

the x coordinate

getY

public double getY()

Gets the y coordinate.

Overrides:

getY in class MPoint

Returns:

the y coordinate

getZ

public double getZ()

Gets the z coordinate.

Overrides:

getZ in class MPoint

Returns:

the z coordinate

setXYZ

public void setXYZ(double x,
                   double y,
                   double z)

Sets the atom coordinates.

Overrides:

setXYZ in class MPoint

Parameters:

x - the x coordinate

y - the y coordinate

z - the z coordinate

getPoint

public MPoint getPoint(int i)

Gets the point.

Overrides:

getPoint in class MPoint

Parameters:

i - the point index (must be 0)

Returns:

the point's clone

transform

public void transform(CTransform3D t,
                      int opts)

Does not perform any operation. An atom set point's location is fixed to the atoms.

Overrides:

transform in class MPoint

Parameters:

t - the transformation matrix

opts - transform options or 0

isTransformable

public boolean isTransformable()

Is it a transformable object?

Overrides:

isTransformable in class MObject

Returns:

true if the object can be transformed, false otherwise

Since:

Marvin 3.5, 07/06/2004

checkValidity

public boolean checkValidity(MDocument doc,
                             java.util.Vector invec)

Is it a valid object in the document?

Overrides:

checkValidity in class MObject

Parameters:

doc - the document

invec - vector for invalid atoms or null

Returns:

true if the object is valid, false if it contains an unknown atom

Since:

Marvin 3.5, 07/06/2004

finishCloning

public void finishCloning(MDocument olddoc,
                          MDocument newdoc)

Finish cloning a document. Called by the copy constructor.

Overrides:

finishCloning in class MObject

Since:

Marvin 3.5, 07/02/2004