Structure Database (LMSD)
Common Name
N-(3-oxo-hexanoyl)-homoserine lactone
Systematic Name
N-(3-oxo-hexanoyl)-homoserine lactone
Synonyms
- N-(3-Oxohexanoyl)homoserine lactone
3D model of N-(3-oxo-hexanoyl)-homoserine lactone
Please note: Where there are chiral atoms but the stereochemistry is undefined, the 3D model takes an arbitrary conformation
Classification
Category
Main Class
Sub Class
Biological Context
Quorum sensing is a regulatory system used by bacteria for controlling gene expression in response to increasing cell density.1 This regulatory process manifests itself with a variety of phenotypes including biofilm formation and virulence factor production.2 Coordinated gene expression is achieved by the production, release, and detection of small diffusible signal molecules called autoinducers. The N-acylated homoserine lactones (AHLs) comprise one such class of autoinducers, each of which generally consists of a fatty acid coupled with homoserine lactone (HSL). Regulation of bacterial quorum sensing signaling systems to inhibit pathogenesis represents a new approach to antimicrobial therapy in the treatment of infectious diseases.3 AHLs vary in acyl group length (C4-C18), in the substitution of C3 (hydrogen, hydroxyl, or oxo group), and in the presence or absence of one or more carbon-carbon double bonds in the fatty acid chain. These differences confer signal specificity through the affinity of transcriptional regulators of the LuxR family.4 In one of the most-studied quorum-sensing systems in gram-negative bacteria, the LuxI AHL synthase catalyzes the production of N-(β-ketocaproyl)-L-homoserine lactone (N-(β-ketocaproyl)-L-HSL) utilizing S-adenosylmethionine and hexanoyl-acyl carrier protein as reaction substrates in the marine bioluminescence bacterium V. fischeri.5 At increased populations of the bacteria, localized higher concentrations of N-(β-ketocaproyl)-L-HSL, an endogenous ligand to transcriptional factor LuxR, leads to increased production of both the AHL synthase and proteins responsible for bioluminescence.1 Numerous other species of bacteria also employ N-(β-ketocaproyl)-L-HSL in cell-to-cell communication.6,7,8,9
This information has been provided by Cayman Chemical
References
References
String Representations
InChiKey (Click to copy)
YRYOXRMDHALAFL-QMMMGPOBSA-N
InChi (Click to copy)
InChI=1S/C10H15NO4/c1-2-3-7(12)6-9(13)11-8-4-5-15-10(8)14/h8H,2-6H2,1H3,(H,11,13)/t8-/m0/s1
SMILES (Click to copy)
[C@@H]1(CCOC1=O)NC(=O)CC(=O)CCC
Other Databases
Calculated Physicochemical Properties
Heavy Atoms
15
Rings
1
Aromatic Rings
Rotatable Bonds
5
Van der Waals Molecular Volume
207.44
Topological Polar Surface Area
74.54
Hydrogen Bond Donors
1
Hydrogen Bond Acceptors
5
logP
0.75
Molar Refractivity
53.04
Admin
Created at
-
Updated at
17th Nov 2020