Microarray analysis of RAW 264.7 cells treated with Kdo2-lipid A (KLA) and compactin (full time course)

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Kdo2-Lipid A / compactin gene array data - treatment:control ratios

KEGG pathway: Glycosphingolipid biosynthesis - ganglio series (mmu00604)

Legend:graph_icon: View data/graphs for replicates
Gene symbol    Time course plot Accession Description Treatment 30min 1hr 2hr 4hr 8hr 12hr 24hr
AK085642
KLA  Compactin  Compactin+KLA
AK085642 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630050A03 product:unclassifiable, full insert sequence [AK085642] KLA1.000 0.970 0.970 1.030 1.010 0.990 1.000
Compactin1.030 0.990 0.960 1.030 1.030 1.040 0.970
KLA/Compactin1.050 0.950 1.000 0.990 1.040 1.020 1.020
AK209324
KLA  Compactin  Compactin+KLA
AK209324 cDNA, clone:Y2G0114L23, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000060207, based on BLAT search. [AK209324] KLA0.880 0.650 1.030 0.930 1.150 0.940 0.680
Compactin1.180 1.090 1.030 0.970 1.050 0.980 0.980
KLA/Compactin0.950 0.650 0.990 0.860 1.040 0.700 0.560
B3galt4
KLA  Compactin  Compactin+KLA
NM_019420 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 (B3galt4), mRNA [NM_019420] KLA0.940 0.840 0.860 0.870 0.900 1.020 1.150
Compactin1.000 1.040 1.010 1.070 1.090 1.120 1.130
KLA/Compactin1.040 0.870 0.850 0.900 0.980 1.250 1.000
B4galnt1
KLA  Compactin  Compactin+KLA
BC022180 beta-1,4-N-acetyl-galactosaminyl transferase 1, mRNA (cDNA clone IMAGE:4006866), complete cds. [BC022180] KLA0.960 0.830 0.990 0.940 0.760 0.900 0.970
Compactin0.960 1.000 1.010 0.960 0.980 0.900 0.920
KLA/Compactin0.840 1.010 1.040 0.930 0.850 0.880 1.020
B4galnt1
KLA  Compactin  Compactin+KLA
NM_008080 beta-1,4-N-acetyl-galactosaminyl transferase 1 (B4galnt1), mRNA [NM_008080] KLA0.940 1.030 1.040 0.760 0.600 0.630 0.650
Compactin1.050 0.920 0.970 1.080 0.950 1.040 1.080
KLA/Compactin0.980 1.010 0.910 0.770 0.670 0.600 0.670
Glb1
KLA  Compactin  Compactin+KLA
NM_009752 galactosidase, beta 1 (Glb1), mRNA [NM_009752] KLA0.930 0.960 1.060 0.950 0.970 1.000 1.320
Compactin1.010 0.960 1.020 1.050 0.970 0.990 1.030
KLA/Compactin1.130 0.950 1.020 0.990 0.900 0.950 1.210
Glb1
KLA  Compactin  Compactin+KLA
NM_009752 galactosidase, beta 1 (Glb1), mRNA [NM_009752] KLA1.130 1.140 1.090 1.050 0.940 1.080 1.350
Compactin1.220 1.150 1.170 1.250 0.990 1.110 1.160
KLA/Compactin1.290 1.170 1.160 0.940 0.940 1.050 1.180
Glb1
KLA  Compactin  Compactin+KLA
NM_009752 galactosidase, beta 1 (Glb1), mRNA [NM_009752] KLA1.300 1.220 1.300 1.220 0.950 1.030 1.360
Compactin1.330 1.190 1.310 1.170 1.280 1.160 1.020
KLA/Compactin1.330 1.050 1.190 1.240 0.980 1.040 1.150
Hexa
KLA  Compactin  Compactin+KLA
NM_010421 hexosaminidase A (Hexa), mRNA [NM_010421] KLA1.110 0.990 0.970 0.990 0.880 0.850 0.780
Compactin1.180 1.110 1.120 1.170 0.940 0.890 0.700
KLA/Compactin1.180 1.030 0.950 0.980 0.740 0.730 0.680
Hexb
KLA  Compactin  Compactin+KLA
NM_010422 hexosaminidase B (Hexb), mRNA [NM_010422] KLA1.110 1.030 1.020 0.940 0.600 0.580 0.730
Compactin1.150 1.100 1.100 1.130 1.100 1.040 0.950
KLA/Compactin1.270 1.070 0.920 0.930 0.670 0.590 0.610
Slc33a1
KLA  Compactin  Compactin+KLA
NM_015728 solute carrier family 33 (acetyl-CoA transporter), member 1 (Slc33a1), mRNA [NM_015728] KLA0.930 1.010 0.990 0.900 0.960 0.930 0.870
Compactin1.020 1.080 0.940 1.030 0.900 1.000 0.970
KLA/Compactin0.970 0.980 0.950 0.970 0.950 1.010 0.880
Slc33a1
KLA  Compactin  Compactin+KLA
NM_015728 solute carrier family 33 (acetyl-CoA transporter), member 1 (Slc33a1), mRNA [NM_015728] KLA0.960 0.840 0.980 0.980 1.010 0.910 0.660
Compactin1.000 1.030 0.930 0.940 0.970 1.080 1.120
KLA/Compactin0.910 1.050 1.000 0.920 0.980 0.910 0.660
St3gal1
KLA  Compactin  Compactin+KLA
NM_009177 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 (St3gal1), mRNA [NM_009177] KLA0.880 1.660 2.650 3.270 2.900 2.790 5.300
Compactin0.890 0.890 0.880 0.860 1.340 1.130 1.000
KLA/Compactin0.960 1.490 2.450 2.820 3.440 4.810 7.850
St3gal2
KLA  Compactin  Compactin+KLA
NM_009179 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 (St3gal2), mRNA [NM_009179] KLA0.950 0.960 0.940 0.900 0.920 0.920 1.050
Compactin1.000 1.020 1.030 1.060 0.980 1.080 1.000
KLA/Compactin1.020 0.970 0.960 0.920 0.900 1.010 0.950
St3gal2
KLA  Compactin  Compactin+KLA
NM_009179 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 (St3gal2), mRNA [NM_009179] KLA1.150 1.090 0.950 0.750 0.790 0.940 0.940
Compactin1.160 1.110 1.070 1.080 1.180 1.070 1.200
KLA/Compactin1.210 0.990 0.870 0.770 0.850 0.970 0.920
St3gal5
KLA  Compactin  Compactin+KLA
NM_011375 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 (St3gal5), transcript variant 2, mRNA [NM_011375] KLA1.080 0.890 0.850 0.960 0.670 0.890 1.520
Compactin1.060 1.110 0.980 1.250 1.040 1.420 2.100
KLA/Compactin1.110 1.000 0.900 0.710 0.670 0.970 1.680
St6galna
c3
KLA  Compactin  Compactin+KLA
NM_011372 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 (St6galnac3), mRNA [NM_011372] KLA1.010 0.990 1.000 0.970 0.980 1.060 0.960
Compactin0.990 0.990 0.940 0.960 0.940 1.000 1.010
KLA/Compactin0.970 0.960 0.930 1.000 1.020 0.920 0.990
St6galna
c4
KLA  Compactin  Compactin+KLA
NM_011373 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 (St6galnac4), mRNA [NM_011373] KLA0.940 1.070 1.280 1.720 1.760 1.660 1.960
Compactin1.000 1.020 0.960 1.200 0.950 0.920 0.920
KLA/Compactin1.010 1.040 1.090 1.290 1.560 1.570 1.760
St6galna
c4
KLA  Compactin  Compactin+KLA
NM_011373 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 (St6galnac4), mRNA [NM_011373] KLA1.010 0.950 1.050 1.190 1.160 1.030 1.050
Compactin0.960 0.990 0.910 0.960 0.840 0.790 0.770
KLA/Compactin0.910 1.040 0.870 1.010 1.010 1.140 1.270
St6galna
c5
KLA  Compactin  Compactin+KLA
NM_012028 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (St6galnac5), mRNA [NM_012028] KLA0.980 1.030 1.070 0.980 1.050 1.060 1.000
Compactin0.990 0.980 1.010 1.030 0.950 1.050 1.050
KLA/Compactin1.020 1.020 1.010 0.970 1.010 0.950 1.000
St6galna
c5
KLA  Compactin  Compactin+KLA
NM_012028 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 (St6galnac5), mRNA [NM_012028] KLA1.040 0.920 0.990 0.990 1.040 1.010 1.010
Compactin1.050 1.030 0.970 1.040 1.100 1.020 1.030
KLA/Compactin0.940 1.090 1.030 1.010 0.980 1.080 0.990
St6galna
c6
KLA  Compactin  Compactin+KLA
AK035447 adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530049M17 product:sialytransferase 7 ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialytransferase) F, full insert sequen KLA1.070 0.950 1.070 1.180 0.970 1.020 1.070
Compactin1.020 1.050 1.030 1.070 1.000 1.040 0.980
KLA/Compactin1.060 1.050 1.060 1.040 0.980 0.940 1.010
St6galna
c6
KLA  Compactin  Compactin+KLA
NM_016973 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 (St6galnac6), transcript variant 1, mRNA [NM_016973] KLA0.940 0.830 0.710 0.690 0.770 0.680 0.770
Compactin0.990 1.060 1.050 0.890 0.910 0.980 0.860
KLA/Compactin0.910 0.870 0.870 0.630 0.670 0.660 0.930
St6galna
c6
KLA  Compactin  Compactin+KLA
NM_016973 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 (St6galnac6), transcript variant 1, mRNA [NM_016973] KLA1.110 0.940 0.910 0.680 0.650 0.680 0.760
Compactin1.100 1.190 1.120 1.090 1.100 0.850 0.960
KLA/Compactin1.050 0.930 0.920 0.710 0.660 0.560 0.820
St8sia1
KLA  Compactin  Compactin+KLA
NM_011374 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 (St8sia1), mRNA [NM_011374] KLA1.040 1.000 1.000 1.000 0.950 1.080 1.020
Compactin0.960 1.030 1.030 0.990 1.030 1.090 1.070
KLA/Compactin0.990 0.980 0.930 1.000 1.040 0.990 1.060
St8sia1
KLA  Compactin  Compactin+KLA
NM_011374 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 (St8sia1), mRNA [NM_011374] KLA1.100 1.090 1.020 1.100 0.840 0.850 0.800
Compactin1.180 0.970 1.060 1.150 1.170 1.190 1.110
KLA/Compactin1.060 1.010 1.040 1.120 0.930 0.820 0.830
St8sia5
KLA  Compactin  Compactin+KLA
NM_153124 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 (St8sia5), transcript variant 2, mRNA [NM_153124] KLA1.110 0.970 1.020 1.160 0.930 1.140 1.280
Compactin0.960 0.960 1.000 1.040 0.980 0.980 0.840
KLA/Compactin0.960 1.000 1.060 1.150 1.080 0.970 1.090
St8sia5
KLA  Compactin  Compactin+KLA
X98014 gb|M.musculus mRNA for alpha-2,8-sialyltransferase. [X98014] KLA1.040 1.000 0.990 1.030 0.970 0.980 1.070
Compactin0.960 0.980 1.010 1.010 1.020 0.990 0.930
KLA/Compactin0.960 0.970 1.040 0.890 0.970 0.930 1.000