Microarray analysis of RAW 264.7 cells treated with Kdo2-lipid A (KLA) and compactin (full time course)

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Kdo2-Lipid A / compactin gene array data - treatment:control ratios

KEGG pathway: Glycosaminoglycan biosynthesis - heparan sulfate / heparin (mmu00534)

Legend:graph_icon: View data/graphs for replicates
Gene symbol    Time course plot Accession Description Treatment 30min 1hr 2hr 4hr 8hr 12hr 24hr
B3galt6
KLA  Compactin  Compactin+KLA
NM_080445 UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6 (B3galt6), mRNA [NM_080445] KLA1.030 1.010 0.930 0.980 0.770 0.720 0.610
Compactin1.110 1.140 1.170 1.220 1.060 1.190 1.140
KLA/Compactin1.060 0.940 0.900 1.020 0.720 0.810 0.590
B3gat3
KLA  Compactin  Compactin+KLA
AK079723 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430034G17 product:beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I), full insert sequence [AK079723] KLA0.650 0.810 0.710 0.590 1.100 1.120 0.910
Compactin0.870 0.910 0.970 0.750 1.050 1.170 1.190
KLA/Compactin0.580 0.630 0.660 0.720 0.910 0.920 0.950
B3gat3
KLA  Compactin  Compactin+KLA
NM_024256 beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) (B3gat3), mRNA [NM_024256] KLA0.790 1.020 0.760 0.810 1.390 1.230 1.810
Compactin0.930 0.900 0.840 0.790 0.970 1.110 1.070
KLA/Compactin0.860 0.920 0.750 0.860 0.980 1.390 2.320
B3gat3
KLA  Compactin  Compactin+KLA
NM_024256 beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) (B3gat3), mRNA [NM_024256] KLA0.860 0.940 0.720 0.820 1.200 1.280 1.570
Compactin0.870 0.850 0.870 0.760 0.910 1.080 1.080
KLA/Compactin0.930 0.900 0.850 0.760 1.000 1.380 2.110
B3gat3
KLA  Compactin  Compactin+KLA
NM_024256 beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) (B3gat3), mRNA [NM_024256] KLA0.910 0.930 0.960 0.870 1.160 1.410 1.770
Compactin1.000 0.980 0.890 0.950 0.990 1.070 1.100
KLA/Compactin0.950 0.950 0.860 0.840 1.200 1.520 2.100
B4galt7
KLA  Compactin  Compactin+KLA
NM_146045 xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) (B4galt7), mRNA [NM_146045] KLA0.860 0.850 0.760 0.740 0.930 1.110 1.260
Compactin1.100 1.030 0.990 1.170 1.210 1.290 1.350
KLA/Compactin1.040 0.780 0.900 0.820 1.080 1.280 1.170
Ext1
KLA  Compactin  Compactin+KLA
NM_010162 exostoses (multiple) 1 (Ext1), mRNA [NM_010162] KLA1.020 1.090 1.190 2.000 2.060 1.740 1.320
Compactin1.070 1.010 1.030 1.080 0.890 0.820 0.820
KLA/Compactin1.040 0.990 1.220 1.960 1.940 1.710 1.570
Ext2
KLA  Compactin  Compactin+KLA
NM_010163 exostoses (multiple) 2 (Ext2), mRNA [NM_010163] KLA0.970 0.860 0.790 0.740 0.760 0.580 0.690
Compactin0.920 0.980 0.940 0.680 0.950 1.090 0.890
KLA/Compactin0.870 0.980 0.960 0.930 0.580 0.640 0.890
Extl1
KLA  Compactin  Compactin+KLA
172072649 exostoses (multiple)-like 1 KLA0.940 0.990 0.970 1.020 0.970 1.090 1.750
Compactin0.850 1.000 0.970 1.010 0.890 0.760 1.550
KLA/Compactin0.910 0.950 1.030 1.010 1.040 1.220 1.290
Extl1
KLA  Compactin  Compactin+KLA
NM_019578 exostoses (multiple)-like 1 (Extl1), mRNA [NM_019578] KLA0.940 1.020 0.940 1.020 1.030 0.980 1.400
Compactin0.960 0.930 0.970 0.950 1.020 0.870 1.360
KLA/Compactin0.970 1.000 0.980 1.070 0.950 1.120 1.250
Extl2
KLA  Compactin  Compactin+KLA
NM_021388 exostoses (multiple)-like 2 (Extl2), mRNA [NM_021388] KLA0.880 1.140 0.740 0.890 1.100 0.800 0.570
Compactin0.860 0.950 0.960 0.900 0.930 0.980 0.930
KLA/Compactin0.940 1.090 0.890 0.730 0.780 0.740 0.670
Extl3
KLA  Compactin  Compactin+KLA
NM_018788 exostoses (multiple)-like 3 (Extl3), mRNA [NM_018788] KLA0.960 0.990 0.960 0.910 0.830 0.960 1.090
Compactin0.940 0.920 0.980 0.940 0.840 0.990 1.260
KLA/Compactin1.010 0.950 0.920 0.940 1.170 1.060 1.120
Extl3
KLA  Compactin  Compactin+KLA
NM_018788 exostoses (multiple)-like 3 (Extl3), mRNA [NM_018788] KLA1.050 1.020 1.100 1.190 1.280 1.260 1.180
Compactin1.010 1.050 0.950 1.010 0.890 0.960 1.180
KLA/Compactin1.100 1.040 1.010 1.170 1.230 1.320 1.220
Glce
KLA  Compactin  Compactin+KLA
NM_033320 glucuronyl C5-epimerase (Glce), mRNA [NM_033320] KLA0.930 0.850 0.930 0.810 0.800 1.190 1.230
Compactin0.960 0.920 0.950 0.900 0.950 0.860 1.010
KLA/Compactin0.920 0.950 0.820 0.670 0.830 1.120 1.080
Glce
KLA  Compactin  Compactin+KLA
NM_033320 glucuronyl C5-epimerase (Glce), mRNA [NM_033320] KLA1.040 1.160 1.120 1.100 1.140 1.270 1.390
Compactin1.010 1.050 1.030 1.020 1.040 1.020 1.160
KLA/Compactin1.040 1.070 1.170 1.070 1.080 1.270 1.280
Hs2st1
KLA  Compactin  Compactin+KLA
170172559 heparan sulfate 2-O-sulfotransferase 1 KLA1.140 1.090 0.850 1.130 1.460 1.050 0.880
Compactin0.960 1.050 1.110 0.920 1.130 1.080 1.050
KLA/Compactin1.030 1.060 1.290 1.350 0.970 0.870 1.140
Hs2st1
KLA  Compactin  Compactin+KLA
NM_011828 heparan sulfate 2-O-sulfotransferase 1 (Hs2st1), mRNA [NM_011828] KLA1.080 1.130 1.060 0.880 0.770 0.890 1.000
Compactin1.130 1.100 1.070 1.130 0.980 0.990 0.900
KLA/Compactin1.090 1.210 1.030 0.850 0.730 0.980 1.010
Hs3st1
KLA  Compactin  Compactin+KLA
NM_010474 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 (Hs3st1), mRNA [NM_010474] KLA0.920 1.040 0.950 0.960 1.040 1.030 1.080
Compactin1.070 1.090 1.060 1.000 1.090 1.030 1.070
KLA/Compactin1.030 1.060 0.900 0.950 0.950 0.980 1.020
Hs3st2
KLA  Compactin  Compactin+KLA
NM_001081327 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 (Hs3st2), mRNA [NM_001081327] KLA1.000 0.990 1.030 1.080 0.980 0.970 0.970
Compactin0.970 1.060 1.030 0.970 1.010 0.990 1.000
KLA/Compactin1.010 1.010 1.020 1.030 0.960 0.950 1.010
Hs3st3a1
KLA  Compactin  Compactin+KLA
NM_178870 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 (Hs3st3a1), mRNA [NM_178870] KLA1.000 1.240 1.040 0.930 0.930 1.040 0.950
Compactin0.980 1.030 1.030 1.060 0.930 1.000 1.160
KLA/Compactin1.030 0.970 0.940 1.020 1.000 1.000 1.000
Hs3st3a1
KLA  Compactin  Compactin+KLA
NM_178870 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 (Hs3st3a1), mRNA [NM_178870] KLA1.060 1.020 1.080 0.970 1.070 1.020 1.030
Compactin1.000 0.990 1.010 1.020 1.110 1.000 1.010
KLA/Compactin0.990 0.950 0.980 1.010 0.970 1.030 1.020
Hs3st3b1
KLA  Compactin  Compactin+KLA
NM_018805 heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 (Hs3st3b1), mRNA [NM_018805] KLA1.060 1.220 1.250 0.950 1.040 1.260 1.120
Compactin0.940 0.990 1.090 1.000 0.870 1.060 1.340
KLA/Compactin0.990 1.130 1.280 1.000 1.080 0.940 1.110
Hs3st5
KLA  Compactin  Compactin+KLA
124487076 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 KLA1.030 1.070 1.000 0.960 0.970 1.060 1.020
Compactin0.970 1.010 1.050 0.990 1.020 0.990 1.010
KLA/Compactin0.960 0.970 1.040 0.970 1.000 0.950 1.000
Hs3st5
KLA  Compactin  Compactin+KLA
AK086098 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930005L05 product:unclassifiable, full insert sequence. [AK086098] KLA1.000 0.970 1.040 1.030 1.080 1.020 0.980
Compactin1.080 0.980 0.930 1.000 1.040 0.960 0.980
KLA/Compactin1.020 0.990 1.000 0.980 1.020 1.030 0.970
Hs3st5
KLA  Compactin  Compactin+KLA
NM_001081208 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 (Hs3st5), mRNA [NM_001081208] KLA1.000 1.020 0.940 1.020 1.030 1.010 0.990
Compactin1.010 1.030 1.000 1.060 0.990 1.040 0.950
KLA/Compactin0.990 1.170 0.960 1.000 0.930 1.070 1.010
Hs6st1
KLA  Compactin  Compactin+KLA
NM_015818 heparan sulfate 6-O-sulfotransferase 1 (Hs6st1), mRNA [NM_015818] KLA1.180 1.040 0.620 0.360 0.620 0.600 0.790
Compactin1.120 1.090 1.140 1.140 1.040 0.830 0.960
KLA/Compactin1.220 1.030 0.670 0.390 0.540 0.610 0.710
Hs6st2
KLA  Compactin  Compactin+KLA
AK031649 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030470D11 product:heparan sulfate 6-O-sulfotransferase 2, full insert sequence. [AK031649] KLA1.010 1.000 1.000 0.970 1.020 1.230 1.010
Compactin1.050 1.070 0.930 1.040 1.020 1.070 1.060
KLA/Compactin1.060 0.990 1.000 0.930 1.040 1.030 0.980
Hs6st2
KLA  Compactin  Compactin+KLA
NM_001077202 heparan sulfate 6-O-sulfotransferase 2 (Hs6st2), transcript variant 1, mRNA [NM_001077202] KLA0.960 1.010 1.060 0.930 1.020 1.020 1.040
Compactin0.980 1.000 1.050 1.030 0.960 1.020 0.990
KLA/Compactin0.940 0.910 0.980 0.980 1.040 1.020 1.010
Hs6st2
KLA  Compactin  Compactin+KLA
NM_001077202 heparan sulfate 6-O-sulfotransferase 2 (Hs6st2), transcript variant 1, mRNA [NM_001077202] KLA1.040 1.010 0.980 0.980 0.980 0.940 0.980
Compactin1.050 0.950 1.030 0.970 1.020 1.000 0.940
KLA/Compactin0.990 1.010 0.920 1.000 0.960 1.280 0.990
Hs6st3
KLA  Compactin  Compactin+KLA
141802434 heparan sulfate 6-O-sulfotransferase 3 KLA1.040 0.950 1.050 1.220 1.110 1.190 1.360
Compactin0.970 1.070 1.040 1.190 1.000 1.030 1.070
KLA/Compactin1.040 1.070 0.950 1.250 1.190 1.280 1.460
Hs6st3
KLA  Compactin  Compactin+KLA
NM_015820 heparan sulfate 6-O-sulfotransferase 3 (Hs6st3), mRNA [NM_015820] KLA1.070 1.020 0.910 1.170 1.030 0.950 1.070
Compactin0.950 1.010 1.060 1.090 1.150 1.070 0.980
KLA/Compactin1.000 1.090 1.080 1.130 1.050 1.090 1.240
Hs6st3
KLA  Compactin  Compactin+KLA
NM_015820 heparan sulfate 6-O-sulfotransferase 3 (Hs6st3), mRNA [NM_015820] KLA1.130 1.040 1.050 1.190 1.000 1.000 1.180
Compactin1.140 1.040 1.080 1.300 1.030 1.020 0.970
KLA/Compactin1.000 1.080 1.020 1.180 1.090 1.150 1.240
Ndst1
KLA  Compactin  Compactin+KLA
AK004787 adult male lung cDNA, RIKEN full-length enriched library, clone:1200015G06 product:unclassifiable, full insert sequence. [AK004787] KLA0.950 0.970 0.790 0.830 1.200 1.130 1.690
Compactin0.910 0.980 0.950 0.970 1.190 1.360 1.620
KLA/Compactin0.950 0.880 0.850 0.830 1.170 1.190 1.650
Ndst1
KLA  Compactin  Compactin+KLA
NM_008306 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 (Ndst1), mRNA [NM_008306] KLA0.940 0.950 0.960 0.920 1.120 0.960 1.300
Compactin0.930 0.990 1.040 1.010 1.020 1.030 1.220
KLA/Compactin0.970 0.920 0.920 0.920 0.890 0.980 1.040
Ndst1
KLA  Compactin  Compactin+KLA
NM_008306 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 (Ndst1), mRNA [NM_008306] KLA0.950 1.000 0.980 1.080 1.040 0.980 0.850
Compactin1.020 0.980 0.960 0.930 0.920 0.950 0.860
KLA/Compactin0.980 0.930 0.920 0.980 0.970 0.890 0.890
Ndst1
KLA  Compactin  Compactin+KLA
NM_008306 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 (Ndst1), mRNA [NM_008306] KLA1.000 0.990 1.030 0.970 1.090 1.070 1.040
Compactin0.930 1.030 0.910 0.960 1.010 0.950 1.000
KLA/Compactin1.030 0.970 0.990 1.000 1.020 1.090 1.010
Ndst2
KLA  Compactin  Compactin+KLA
NM_010811 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 (Ndst2), mRNA [NM_010811] KLA0.880 0.680 0.780 1.050 0.980 1.090 0.690
Compactin0.930 0.880 0.890 0.880 0.910 0.950 0.800
KLA/Compactin0.890 0.720 0.710 0.930 1.110 0.920 0.570
Ndst3
KLA  Compactin  Compactin+KLA
71043952 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 KLA0.950 0.980 0.990 1.010 1.000 1.030 1.000
Compactin1.020 0.890 1.030 0.950 1.010 1.030 0.990
KLA/Compactin0.920 1.000 0.990 1.050 1.100 1.050 1.060
Ndst3
KLA  Compactin  Compactin+KLA
NM_031186 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 (Ndst3), mRNA [NM_031186] KLA0.930 1.020 1.000 0.970 1.020 1.020 0.980
Compactin0.940 0.980 0.980 1.050 0.940 1.050 0.980
KLA/Compactin1.020 0.960 1.000 1.060 1.020 0.940 1.040
Ndst4
KLA  Compactin  Compactin+KLA
NM_022565 N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 (Ndst4), mRNA [NM_022565] KLA1.010 0.980 0.990 1.050 1.040 1.040 1.040
Compactin0.980 0.970 0.990 1.660 1.040 0.960 0.930
KLA/Compactin0.920 1.020 0.980 0.960 0.990 0.940 0.980
Ndst4
KLA  Compactin  Compactin+KLA
NM_022565 N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 (Ndst4), mRNA [NM_022565] KLA1.070 1.030 0.970 0.940 1.020 1.050 0.920
Compactin0.940 1.080 0.990 0.970 0.930 0.990 0.980
KLA/Compactin1.030 1.000 1.030 0.980 0.980 1.050 0.930
Xylt1
KLA  Compactin  Compactin+KLA
120407063 xylosyltransferase 1 KLA0.970 0.990 1.000 0.930 1.140 1.320 1.390
Compactin0.950 1.010 0.920 0.980 0.980 1.060 1.130
KLA/Compactin1.090 0.980 0.940 0.890 1.150 1.220 1.200
Xylt1
KLA  Compactin  Compactin+KLA
AJ539164 mRNA for xylosyltransferase I (Xylt1 gene) [AJ539164] KLA0.980 1.060 1.030 1.120 1.120 1.000 1.180
Compactin1.010 1.070 0.950 1.050 1.070 1.080 0.990
KLA/Compactin0.970 1.000 1.000 1.120 1.120 1.080 1.130
Xylt2
KLA  Compactin  Compactin+KLA
NM_145828 xylosyltransferase II (Xylt2), mRNA [NM_145828] KLA0.890 0.800 2.020 3.340 2.350 3.390 3.820
Compactin0.980 0.860 0.930 1.040 0.890 1.000 1.200
KLA/Compactin1.000 0.780 1.940 3.870 4.150 4.520 4.950
Xylt2
KLA  Compactin  Compactin+KLA
NM_145828 xylosyltransferase II (Xylt2), mRNA [NM_145828] KLA1.160 0.810 2.020 3.500 3.160 4.670 4.230
Compactin1.010 0.990 1.090 1.090 1.040 1.090 1.260
KLA/Compactin1.130 0.800 2.560 4.190 3.910 5.860 5.230