Structure database (LMSD)

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LM IDLMGP20010043
Common NameP-IsoPGE2-PC
Systematic Name1-hexadecanoyl-2-(9-oxo-11,15-dihydroxy-5Z,13E-prostadienoyl)-sn-glycero-
phosphocholine
Synonyms-
Exact Mass
829.5469 (neutral)    Calculate m/z:
FormulaC44H80NO11P
CategoryGlycerophospholipids [GP]
Main ClassOxidized glycerophospholipids [GP20]
Sub ClassOxidized glycerophosphocholines [GP2001]
AbbrevPC 36:4;O3
PubChem CID134812331
InChIKeyRBCIEFVODSDAEH-ZRLPZGMBSA-N  Show lipids differing only in stereochemistry/bond geometry
InChI
InChI=1S/C44H80NO11P/c1-6-8-10-11-12-13-14-15-16-17-18-19-24-28-43(49)53-35-38(36-55-57(51,52)54-33-32-45(3,4)5)56-44(50)29-25-21-20-23-27-39-40(42(48)34-41(39)47)31-30-37(46)26-22-9-7-2/h20,23,30-31,37-40,42,46,48H,6-19,21-22,24-29,32-36H2,1-5H3/b23-20-,31-30+/t37?,38-,39?,40?,42?/m1/s1
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SMILES
[C@](COP(=O)([O-])OCC[N+](C)(C)C)([H])(OC(CCC/C=C\CC1C(=O)CC(O)C1/C=C/C(O)CCCCC)=O)COC(CCCCCCCCCCCCCCC)=O
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StatusActive
ReferencesRole of oxidized phospholipids in cardiovascular pathology. David Allen, Devin Hasanally & Amir Ravandi. Clinical Lipidology. Volume 8. Issue 2, pp. 205-215. https://doi.org/10.2217/clp.13.13

https://www.tandfonline.com/doi/pdf/10.2217/clp.13.13
Calculated physicochemical properties (?):
 Heavy Atoms57Rings1Aromatic Rings0Rotatable Bonds38
 van der Waals
Molecular Volume
871.72Topological Polar
Surface Area
168.72Hydrogen
Bond Donors
2Hydrogen
Bond Acceptors
12
 logP10.31Molar
Refractivity
226.56    
LIPID MAPS® abbreviations for glycerophospholipids (GP)

The LIPID MAPS® glycerophospholipid abbreviations (PC, PE, etc.) are used here to refer to species with one or two radyl side-chains where the structures of the side chains are indicated within parentheses in the 'Headgroup(sn1/sn2)' format (e.g. PC(16:0/18:1(9Z)). By default, R stereochemistry at the C-2 carbon of glycerol and attachment of the headgroup at the sn3 position is assumed. Also, acyl chains are assumed by default. The 'O-' prefix is used to indicate the presence of an alkyl ether substituent e.g. PC(O-16:0/18:1(9Z)), whereas the 'P-' prefix is used for the 1Z-alkenyl ether (Plasmalogen) substituent e.g. PC(P-16:0/18:1(9Z)).

For molecules with opposite (S) stereochemistry at C2 of the glycerol group and attachment of the headgroup at the sn1 position, the stereochemistry specification of [S] is appended to the abbreviation. The 'Headgroup(sn3/sn2)' abbreviation format is used.

For molecules with unknown stereochemistry at the C-2 carbon of the glycerol group, the stereochemistry specification of [U] is appended to the abbreviation and the structure is drawn with C-2 stereochemistry unspecified.