Research library - LIPID MAPS Publications
Publications relating to projects funded through the LIPID MAPS consortium since 2003. Peer-reviewed journal articles, by year: 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 20032007
TLR-4 and sustained calcium agonists synergistically produce eicosanoids independent of protein synthesis in RAW264.7 cells.
Buczynski M, Stephens D, Bowers-Gentry R, Grkovich A, Deems R & Dennis E.
The Journal of Biological Chemistry (2007) 282: pp. 22834-22847.
A Laboratory information management system for high throughput experimental lipidomics: Minimal information required for the analysis of lipidomics experiments (MIALE).
Byrnes R, Fahy E & Subramaniam S.
Journal of the Association for Laboratory Automation (2007) 12: pp. 230-238.
http://www.jalajournal.com/article/S1535-5535(07)00106-2/abstract
Quantification of diacylglycerol species from cellular extracts by electrospray ionization mass spectrometry using a linear regression algorithm.
Callender H, Forrester J, Ivanova P, Preininger A, Milne S & Brown H.
Analytical Chemistry (2007) 79: pp. 263-272.
PMID:17194150 [doi:10.1021/ac061083q]
Detection and quantitation of eicosanoids via high performance liquid chromatography-electrospray ionization-mass spectrometry.
Deems R, Buczynski M, Bowers-Gentry R, Harkewicz R & Dennis E.
Methods in Enzymology (2007) 432: pp. 59-82.
LIPID MAPS online tools for lipid research.
Fahy E, Sud M, Cotter D & Subramaniam S.
Nucleic Acids Research (2007) 35: p. W606-12.
PMID:17584797 [doi:10.1093/nar/gkm324]
Sphingomyelinase restricts the lateral diffusion of CD4 and inhibits human immunodeficiency virus fusion.
Finnegan C, Rawat S, Cho E, Guiffre D, Lockett S, Merrill JA & Blumenthal R.
Journal of Virology (2007) 81: pp. 5294-5304.
PMID:17344303 [doi:10.1128/JVI.02553-06]
Parallel SUMOylation-dependent pathways mediate gene- and signal-specific transrepression by LXRs and PPARgamma.
Ghisletti S, Huang W, Ogawa S, Pascual G, Lin M, Willson T, Rosenfeld M & Glass C.
Molecular Cell (2007) 25: pp. 57-70.
Identification of N-acylphosphatidylserine molecules in eukaryotic cells.
Guan Z, Li S, Smith D, Shaw W & Raetz C.
Biochemistry (2007) 46: pp. 14500-14513.
PMID:18031065 [doi:10.1021/bi701907g]
Sublimation as a method of matrix application for mass spectrometric imaging.
Hankin J, Barkley R & Murphy R.
Journal of the American Society for Mass Spectrometry (2007) 18: pp. 1646-1652.
Arachidonate-derived dihomoprostaglandin production observed in endotoxin-stimulated macrophage-like cells.
Harkewicz R, Fahy E, Andreyev A & Dennis E.
The Journal of Biological Chemistry (2007) 282: pp. 2899-2910.
Macrophage PPAR gamma is required for normal skeletal muscle and hepatic insulin sensitivity and full antidiabetic effects of thiazolidinediones.
Hevener A, Olefsky J, Reichart D, Nguyen M, Bandyopadyhay G, Leung H, Watt M, Benner C, Febbraio M, Nguyen A, Folian B, Subramaniam S, Gonzalez F, Glass C & Ricote M.
The Journal of Clinical Investigation (2007) 117: pp. 1658-1669.
PMID:17525798 [doi:10.1172/JCI31561]
Ceramide kinase uses ceramide provided by ceramide transport protein: localization to organelles of eicosanoid synthesis.
Lamour N, Stahelin R, Wijesinghe D, Maceyka M, Wang E, Allegood J, Merrill JA, Cho W & Chalfant C.
Journal of Lipid Research (2007) 48: pp. 1293-1304.
A kinetic model for calcium dynamics in RAW 264.7 cells: 1. mechanisms, parameters, and subpopulational variability.
Maurya M & Subramaniam S.
Biophysical Journal (2007) 93: pp. 709-728.
(Glyco)sphingolipidology: an amazing challenge and opportunity for systems biology.
Merrill JA, Wang M, Park M & Sullards M.
Trends in Biochemical Sciences (2007) 32: pp. 457-468.
Cytoplasmic remodeling of erythrocyte raft lipids during infection by the human malaria parasite Plasmodium falciparum.
Murphy S, Fernandez-Pol S, Chung P, Murthy S, Milne S, Salomao M, Brown H, Lomasney J, Mohandas N & Haldar K.
Blood (2007) 110: pp. 2132-2139.
Detection of the abundance of diacylglycerol and triacylglycerol molecular species in cells using neutral loss mass spectrometry.
Murphy R, James P, McAnoy A, Krank J, Duchoslav E & Barkley R.
Analytical Biochemistry (2007) 366: pp. 59-70.
Ceramide transfer protein function is essential for normal oxidative stress response and lifespan.
Rao R, Yuan C, Allegood J, Rawat S, Edwards M, Wang X, Merrill JA, Acharya U & Acharya J.
Proceedings of the National Academy of Sciences (2007) 104: pp. 11364-11369.
Lipid profiling reveals glycerophospholipid remodeling in zymosan-stimulated macrophages.
Rouzer C, Ivanova P, Byrne M, Brown H & Marnett L.
Biochemistry (2007) 46: pp. 6026-6042.
PMID:17458939 [doi:10.1021/bi0621617]
The LIPID MAPS initiative in lipidomics.
Schmelzer K, Fahy E, Subramaniam S & Dennis E.
Methods in Enzymology (2007) 432: pp. 171-183.
Loss of cardiac tetralinoleoyl cardiolipin in human and experimental heart failure.
Sparagna G, Chicco A, Murphy R, Bristow M, Johnson C, Rees M, Maxey M, McCune S & Moore R.
Journal of Lipid Research (2007) 48: pp. 1559-1570.
FcepsilonRI and Thy-1 domains have unique protein and lipid compositions.
Surviladze Z, Harrison K, Murphy R & Wilson B.
Journal of Lipid Research (2007) 48: pp. 1325-1335.
Elucidation of double bond position in unsaturated lipids by ozone electrospray ionization mass spectrometry.
Thomas M, Mitchell T, Harman D, Deeley J, Murphy R & Blanksby S.
Analytical Chemistry (2007) 79: pp. 5013-5022.
PMID:17547368 [doi:10.1021/ac0702185]
Steroidogenic factor-1 is a sphingolipid binding protein.
Urs A, Dammer E, Kelly S, Wang E, Merrill JA & Sewer M.
Molecular and Cellular Endocrinology (2007) 265: pp. 174-178.
Attenuated virulence of a Francisella mutant lacking the lipid A 4'-phosphatase.
Wang X, Ribeiro A, Guan Z, Abraham S & Raetz C.
Proceedings of the National Academy of Sciences (2007) 104: pp. 4136-4141.
Identification and quantification of dolichol and dolichoic acid in neuromelanin from substantia nigra of the human brain.
Ward W, Guan Z, Zucca F, Fariello R, Kordestani R, Zecca L, Raetz C & Simon J.
Journal of Lipid Research (2007) 48: pp. 1457-1462.
An undecaprenyl phosphate-aminoarabinose flippase required for polymyxin resistance in Escherichia coli.
Yan A, Guan Z & Raetz C.
The Journal of Biological Chemistry (2007) 282: pp. 36077-36089.
N-(3-hydroxyhexanoyl)-L-homoserine lactone is the biologically relevant quormone that regulates the phz operon of Pseudomonas chlororaphis strain 30-84
Khan SR, Herman J, Krank J, Serkova NJ, Churchill MEA, Suga H & Farrand SK.
Appl Environ Microbiol (2007) 73: pp. 7443-7455.
PMID:17921283 [doi:10.1128/aem.01354-07]
Detection and Quantitation of Eicosanoids via High Performance Liquid Chromatography/Electrospray Ionization Mass Spectrometry.
Deems, R. A., Buczynski, M. W., Bowers-Gentry, R. C., Harkewicz, R., and Dennis, E. A. (2007)
Meth. Enzymol., Academic Press, 432, 59-82.
Bioinformatics for Lipidomics.
Fahy, E., D. Cotter, R. Byrnes, M. Sud, A. Maer, J. Li, D. Nadeau, Y. Zhou, and S. Subramaniam.
(2007). Meth. Enzymol. (432), 247-273.
Analysis of ubiquinones, dolichols and dolichol diphosphate-oligosaccharides by liquid chromatography-electrospray ionization mass spectrometry.
Garrett, T. A., Guan, Z., and Raetz, C. R. (2007)
Meth. Enzymol., Academic Press, 432, 117-142.
Glycerophospholipid identification and quantitation by electrospray mass spectrometry.
Ivanova, P., Milne, S., Byrne, M. O., Xiang, Y., and Brown, H. A. (2007)
Meth. Enzymol., Academic Press, 432, 21-57.
Qualitative analysis and quantitative assessment of changes in neutral glycerol lipid molecular species within cells.
Krank, J., Murphy, R. C., Barkley, R. M., Duchoslav, E., and McAnoy, A. (2007)
Meth. Enzymol., Academic Press, 432, 1-20.
Extraction and analysis of sterols in biological matrices by high-performance liquid chromatography electrospray ionization mass spectrometry.
McDonald, J. G., Thompson, B., McCrum, E. C., and Russell, D. W. (2007)
Meth. Enzymol., Academic Press, 432, 143-168.
Quantitation and standardization of lipid internal standards for mass spectroscopy.
Moore, J. D., Caufield, W. V., and Shaw, W. (2007)
Meth. Enzymol., Academic Press, 432, 351-367.
The Lipid Maps Initiative in Lipidomics.
Schmelzer, K., Fahy, E., Deems, R., Subramaniam, S., and Dennis, E. A. (2007)
Meth. Enzymol., Academic Press, 432, 169-181.
Structure-specific, quantitative methods for analysis of sphingolipids by liquid-chromatography tandem mass spectrometry: "Inside-out" sphingolipidomics.
Sullards, M. C., Allegood, J. C., Kelly, S., Wang, E., Haynes, C. A., Park, H., Chen, Y., Shaner, R., and Merrill, A. H., Jr. (2007)
Meth. Enzymol., Academic Press, 432, 83-115.
Quantification of cardiolipin by liquid chromatography-electrospray ionization mass spectrometry.
Garrett, T. A., Kordestani, R., and Raetz, C. R. (2007)
Meth. Enzymol., Academic Press, 433, 213-230.
Biochemical analysis of phospholipase D.
Brown, H. A., Henage, L. G., Preininger, A. M., Xiang, Y., and Exton, J. H. (2007)
Meth. Enzymol., Academic Press, 434, 49-87.
Systems Biology of Macrophages.
Maurya, M. R., Benner,C., Pradervand,S., Glass,C. and Subramaniam,S. (2007)
in Current Topics in Innate Immunity, Ed. J.D. Lambris. Pp. 62-79. Springer, New York.
Neutral lipidomics and mass spectrometry, in Metabolomics, Metabonomics and Metabolite Profiling.
Griffiths, W. ed.,RSC Publishing, London, 161-189.(Biomolecular Science series)
Murphy, R. C., Fitzgerald, M., and Barkley, R. M. (2007)
Bioinformatics of Lipids in Metabolomics, Metabonomics and Metabolite Profiling.
Griffiths, W. ed., RSC Publishing, London, 195-209.(Biomolecular Science series)
Fahy, E. (2007)
Book Chapters
Download all LIPID MAPS Methods in Enzymology Vol 432 Chapters as a single PDF.
Methods in Enzymology, Academic Press, Vol 432
Methods in Enzymology, Academic Press, Vol 433
Methods in Enzymology, Academic Press, Vol 434
