Microarray analysis of thioglycolate-elicited macrophages

Introduction | VAMPIRE Analysis | GOby Analysis
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GOby-rendered report pages.

GOby is a gene annotation tool that identifies statistically overrepresented gene groups, and is available as part of the VAMPIRE Microarray analysis suite.

Download GOby Results

all.zip - GOby rendered report pages from:
Treatment with Kdo2-Lipid A (K), Compactin (C), or both at 12 and 24hr timepoints
  T12_C+K_goby.go.html
  T12_C+K_goby.gotree.html
  T12_C_goby.go.html
  T12_C_goby.gotree.html
  T12_K_goby.go.html
  T12_K_goby.gotree.html
  T24_C+K_goby.go.html
  T24_C+K_goby.gotree.html
  T24_C_goby.go.html
  T24_C_goby.gotree.html
  T24_K_goby.go.html
  T24_K_goby.gotree.html

Bone marrow-derived macrophages (6hr time-point only)
  bm6.go.html
  bm6.gotree.html

Thioglycolate-elicited macrophages (6 and 24hr time-points)
  tg24.go.html
  tg24.gotree.html
  tg6.go.html
  tg6.gotree.html

What's in the .zip files

For each time point, a term table lists annotation terms that were found to be enriched among differentially expressed features. Click a GO ID to view the term in the context of the GO tree hierarchy. Click the group name to view the Entrez Gene ID, feature (probe name), locus (gene symbol), and description for each gene corresponding to that GO term.


Reference: VAMPIRE microarray suite: a web-based platform for the interpretation of gene expression data Albert Hsiao, Trey Ideker, Jerrold M. Olefsky, and Shankar Subramaniam. Nucleic Acids Research, Nucleic Acids Research 2005 33(Web Server issue):W627-W632; doi:10.1093/nar/gki443