MarvinSketch User's Guide - Table of Contents

• Installation/System Requirements
• Introduction to MarvinSketch and the MarvinSketch GUI
• Introduction
• MarvinSketch Graphical User Interface (GUI) Refernce
• Canvas
• Toolbar
• Menu bar
• Pop-up menus
• How To Use Basic MarvinSketch Functions
• Create New molecule
• Open an Existing Molecule File
• Save Molecule
• Save Molecule File
• Save Image
• Print
• How to Draw Structures
• Atoms
• Bonds
• Templates
• How to Draw Reactions
• How to Draw R-group queries
• How to Draw Electron Flow Arrows
• How to Draw a Graphic objects and Text Boxes
• How to Select a Structure
• How to Delete a Structure
• How to Work with Structures
  • Visually Editing the Structure
  • Editing the Source
  • Cleaning
  • Aromatic Rings
• Stereochemistry
• Structure Display Options
• Moving and Rotating
• Scaling
• Common Options
  • Molecule Format
  • Colors
  • Implicit/Explicit Hydrogens
  • Error Highlighting
• Saving Display Options
• Launching Other Windows
• Copying Files Between Programs
  (Cut/Copy/Paste and Drag & Drop)
• Shortcuts
• Chemical Features of MarvinSketch
• Valence Check
• Charges
• Reactions
• Mapping
• Isotopes
• E/Z feature
• S-Groups
• Working with Radicals
• Query Guide
• R-groups
• Atom Lists
• Not Lists
• Generic Atoms
• Atom Properties
• Calculator Plugins
• Elemental Analysis Plugin
• pK_a Plugin
• logP Plugin
• logD Plugin
• Polar Surface Area Plugin
• Charge Plugin
• Huckel Analysis Plugin
• Hydrogen Bond Donor-Acceptor Plugin
• Major Microspecies Plugin
• Polarizability Plugin
• Refractivity Plugin
• Topology Analysis

Marvin User's Guide

Copyright © 1998-2005 ChemAxon Ltd.

http://www.chemaxon.com/marvin