Structure database (LMSD)

  MDLMOL files can be opened in various drawing programs. In ChemDraw, open as filetype "MDL Molfile".
LM IDLMGL05010029
Common NameGlcADG(18:3((9Z,12Z,15Z)/16:0)
Systematic Name1-(9Z,12Z,15Z-octadecatrienoyl)-2-hexadecanoyl-3-O-α-D-glucuronosyl-sn-glycerol
SynonymsGlcADG(34:3)
Exact Mass
766.5231 (neutral)    Calculate m/z:
FormulaC43H74O11
CategoryGlycerolipids [GL]
Main ClassGlycosyldiradylglycerols [GL05]
Sub ClassGlycosyldiacylglycerols [GL0501]
PubChem Compound ID (CID)73242189
InChIKeyGRQWEXRTFAUFIC-YHHQMAHCSA-N  Show lipids differing only in stereochemistry/bond geometry
InChIInChI=1S/C43H74O11/c1-3-5-7-9-11-13-15-17-18-20-21-23-25-27-29-31-36(44)51-33-35
(34-52-43-40(48)38(46)39(47)41(54-43)42(49)50)53-37(45)32-30-28-26-24-22-19-16-1
4-12-10-8-6-4-2/h5,7,11,13,17-18,35,38-41,43,46-48H,3-4,6,8-10,12,14-16,19-34H2,
1-2H3,(H,49,50)/b7-5-,13-11-,18-17-/t35-,38?,39+,40?,41?,43+/m1/s1
SMILESCC/C=C\C/C=C\C/C=C\CCCCCCCC(=O)OC[C@@H](CO[C@@H]1OC([C@H](O)C(O)C1O)C(O)=O)OC(=O
)CCCCCCCCCCCCCCC
StatusActive
ReferencesA new class of plant lipid is essential for protection against phosphorus depletion.
Okazaki Y, Otsuki H, Narisawa T, Kobayashi M, Sawai S, Kamide Y, Kusano M, Aoki T, Hirai MY, Saito K.
Nat Commun. (2013);4:1510
Calculated physicochemical properties (?):
 Heavy Atoms54Rings1Aromatic Rings0Rotatable Bonds36
 van der Waals
Molecular Volume
820.95Topological Polar
Surface Area
171.12Hydrogen
Bond Donors
4Hydrogen
Bond Acceptors
11
 logP10.71Molar
Refractivity
214.74    
LIPID MAPS abbreviations for glycerolipids (GL)

The LIPID MAPS glycerolipid abbreviations (MG,DG,TG) are used here to refer to species with one, two or three radyl side-chains, respectively, where the structures of the side chains are indicated within parentheses in the 'Prefix(sn1/sn2/sn3)' format (e.g. TG(16:0/18:1(9Z)/18:0). Acyl chains are assumed by default. The alkyl ether linkage is represented by the 'O-' prefix, e.g. DG(O-16:0/18:1(9Z)/0:0), whereas the 1Z-alkenyl ether (Plasmalogen) linkage is represented by the 'P-' prefix, e.g. and DG(P-14:0/18:1(9Z)/0:0).

For Diradylglycerols and Triradylglycerols, it is not always possible to experimentally determine the exact position of radyl groups on the glycerol group. For Diradylglycerols with two different radyl groups, two different structural isomers exist. For Triradylglycerols with three different radyl groups, six different isomers exist.

Instead of drawing all possible structural isomers explicitly for Diradylglycerols and Triradylglycerols, the LIPID MAPS abbreviation scheme supports the isomeric specification. A suffix containing 'iso' along with the number of possible isomers is appended to the abbreviation (e.g. [iso2],[iso6]) and a single unique LM_ID is assigned. The structure assigned to the LM_ID corresponds to the radyl substitution shown in the abbreviation. An option is provided to display the other isomers in the group.

The [rac] designation refers to racemic mixtures due to substitution at the sn1 and sn3 positions of glycerol.
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